CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93763
KRH01455
KRH18308
KRH45169

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11110.1	KRG93763	AT5G15850.1	16854975
AT4G11110.1	KRH01455	AT5G15850.1	16854975
AT4G11110.1	KRH18308	AT5G15850.1	16854975
AT4G11110.1	KRH45169	AT5G15850.1	16854975

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g01110.t01	Wine grape	cytosol, plastid	23.24	80.91
KRH41290	Soybean	nucleus	89.87	72.92
KRH27856	Soybean	nucleus	72.11	53.87
KRH77627	Soybean	nucleus	71.75	53.32
KRH25904	Soybean	mitochondrion	6.91	52.25
GSMUA_Achr11P...	Banana	cytosol	45.53	46.36
KRH55271	Soybean	cytosol	6.91	45.67
CDX86817	Canola	nucleus	49.94	43.24
CDY40851	Canola	nucleus	50.18	42.83
Bra035252.1-P	Field mustard	nucleus	49.82	42.65
Solyc08g081990.2.1	Tomato	cytosol	53.04	42.3
AT4G11110.1	Thale cress	nucleus	52.09	42.18
GSMUA_Achr1P28310_001	Banana	nucleus	48.99	40.29
KRH06512	Soybean	nucleus	45.65	37.44
GSMUA_Achr8P05740_001	Banana	nucleus	47.68	37.31
EES19971	Sorghum	cytosol	50.06	37.23
Zm00001d039072_P005	Maize	cytosol	49.7	37.17
VIT_02s0025g01130.t01	Wine grape	cytosol	36.47	37.0
KRH47949	Soybean	nucleus	45.17	36.62
Zm00001d009617_P017	Maize	mitochondrion	49.7	36.39
KRH26155	Soybean	cytosol	33.73	35.91
KRH55275	Soybean	cytosol	34.09	35.57
Os05t0571000-01	Rice	cytosol	48.39	35.49
PGSC0003DMT400031699	Potato	cytosol	36.0	34.4
TraesCS1D01G417600.1	Wheat	cytosol	50.18	33.1
KRH27246	Soybean	plastid	34.68	32.08
KRH22086	Soybean	plastid	34.45	31.9
HORVU1Hr1G090080.3	Barley	cytosol	49.7	31.24
KRH73341	Soybean	nucleus	24.67	30.94
KRH14801	Soybean	nucleus	24.67	30.67

Protein Annotations

MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.2	UniProt:A0A0R0K935	EMBL:ACUP02003347
ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_05G214900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH60015	ProteinID:KRH60015	ProteinID:KRH60015.1
InterPro:Kinase-like_dom_sf	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44218	PANTHER:PTHR44218:SF2	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112	UniParc:UPI0006EDCAA7
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:39571419..39578560

Molecular Weight (calculated)

93951.2 Da

IEP (calculated)

6.263

GRAVY (calculated)

-0.318

Length

839 amino acids

Sequence
(BLAST)

001: MTSLTSYEVV VLLSGVRWNL IKSGIDTQMD SKALPSSSLK TAKSPHNSTG PGSGGSDTDG VTLREWLKSR HCKGSKTDHL SIFRKIVDLV DGSHSEGVAM
101: HNLYPSHIKL LPSNQVMYLG LPTQKKILDS IANSEVLQLE NSFIRKRLSE KVISASLNLR SKKQKFNENA RVAGDWSQCP PRTDLNLQIA NDIKVNAVGS
201: QDYCNEYKED IQFSKHNMQS MSRIPHIFNA GQLQLNSLNE RLEDKWYASP EGGCTTSSNI YCLGVLLFEL LNDFDSERAH IAAMSDLGRR ILPSVFLSEY
301: PMEAGFCLWM MHPEPSSRPT IREILQSEVI NGMREVYFEE LSLSLNQDDA ESELLLHFLI SLEEQKHMDS NKLAEEIRCL ESDVKEVERR HDLRKSLLPS
401: SLQNDSSLQI ENVSLLKESS SSETLPPVST ISNANELRLM KNMCLLESAY FSMRSKIKLP ETDTATHPDK DILRNHDNWC VAQKDMEQHK TTDTLGAFFD
501: GLCKSTRYSK FEVRGIVRNT DFNNPANVIC SLSFDRDEDY FAAAGISKKI KIFEFNALFN DSIDIHYPVV EMSNRSRLSC VCWNNYIQNY LASTDYDGAV
601: KLWDANTGQG FSGFTEHEKR AWSVDFSLVC PTKFVSGSDD CSVKLWSINE KKSLATIRNV ANVCCVQFST HSSHLLAFGS ADYSAYCYDL RNLRSPWCVL
701: AGHRKAVSYV KFLDSETLVS ASTDNMLKIW DLNKTSPVGL STSACSLTLS GHTNEKNFVG LSVADGYIAC GSETNEVFAY YKSLPMPVTS HRFGSIDPIS
801: GKETDVDNGL FVSSVCWREK SDMVIAANSS GCIKVLQMV

Best Arabidopsis Sequence Match ( AT4G11110.1 )
(BLAST)

0001: MMDEGSVGDV SRIDEADVAH LQFKNSEQSF KPENIEVREV KEVQVQREAG SPDCSYGVIA DFLDGKNGGD HVELIGNEPC SSRQNTNDEG DVVEELTVKT
0101: CEGSSMAIVG RPSSRARLEM NRSQFLHRFP LDGDLPGSSS MSKKVIDRGT VSILRNAGKM SLPETSNGQL AIIAVNGEAN EHLTNVERNP VPVEALSHEG
0201: IKTKMLSQSG FSQFFVRKTL KGKGVTFRGP PNNRSKARNM DQQTVASSGS ALVIANTSAK ISSSIPLAAY DGLPCLPSNT SKPSSCANPS DTHRGCGGEG
0301: LSLREWLKSE RQEVNKAECM YIFRQIVDHV DCSHSQGVVL CDLRPSSFKI FKENAVKYVV SGSQRESFDS NMNKETLSQL ENPLVRRRLG DTSSLSIPAK
0401: KQKSSGPSSR QWPMFQRAGG VNIQTENNDG AIQEFHFRSS QPHCSTVACP FTSVSEQLEE KWYASPEELR GDMRSASSNI YSLGILLYEL LSQFQCERAR
0501: EAAMSDIRHR ILPPKFLSEN PKEAGFCLWL LHPESSCRPS TRDILQSEVV NGIPDLYAEG LSLSIEQEDT ESELLQHFLF LSQEKRQKHA GNLMEEIASV
0601: EADIEEIVKR RCAIGPPSLE EASSSSPASS VPEMRLIRNI NQLESAYFAA RIDAHLPEAR YRLRPDRDLL RNSDNTVAEV ENSETWSSDD RVGAFFDGLC
0701: KYARYSKFET RGVLRTSELN NTSNVICSLG FDRDEDYFAT AGVSKKIKIY EFNSLFNESV DIHYPAIEMP NRSKLSGVCW NNYIRNYLAS SDYDGIVKLW
0801: DVTTGQAISH FIEHEKRAWS VDFSEACPTK LASGSDDCSV KLWNINERNC LGTIRNIANV CCVQFSPQSS HLLAFGSSDF RTYCYDLRNL RTPWCILSGH
0901: NKAVSYAKFL DNETLVTAST DNTLKLWDLK KTTHGGLSTN ACSLTFGGHT NEKNFVGLST SDGYIACGSE TNEVYAYHRS LPMPITSYKF GSIDPISGKE
1001: IEEDNNLFVS SVCWRKRSNM VVSASSNGSI KVLQLV

Arabidopsis Description

SPA2Protein SPA1-RELATED 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T014]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.