CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93763
KRH01455
KRH14801
KRH18308
KRH22086
KRH26155
KRH27246
KRH45169
KRH55271
KRH55275
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	KRH22086	AT1G53090.1	18812498
AT1G53090.1	KRH26155	AT1G53090.1	18812498
AT1G53090.1	KRH27246	AT1G53090.1	18812498
AT1G53090.1	KRH55271	AT1G53090.1	18812498
AT1G53090.1	KRH55275	AT1G53090.1	18812498
AT1G53090.1	KRH14801	AT2G32950.1	12887588
AT1G53090.1	KRH73341	AT2G32950.1	12887588
AT1G53090.1	KRH14801	AT2G32950.1	18812498
AT1G53090.1	KRH73341	AT2G32950.1	18812498
AT1G53090.1	KRH14801	AT2G32950.1	21798944
AT1G53090.1	KRH73341	AT2G32950.1	21798944
AT1G53090.1	KRG93763	AT5G15850.1	16854975
AT1G53090.1	KRH01455	AT5G15850.1	16854975
AT1G53090.1	KRH18308	AT5G15850.1	16854975
AT1G53090.1	KRH45169	AT5G15850.1	16854975
AT1G53090.1	KRG93763	AT5G15850.1	18812498
AT1G53090.1	KRH01455	AT5G15850.1	18812498
AT1G53090.1	KRH18308	AT5G15850.1	18812498
AT1G53090.1	KRH45169	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26155	Soybean	cytosol	89.18	90.99
KRH55271	Soybean	cytosol	11.94	75.59
KRH27246	Soybean	plastid	78.11	69.24
KRH22086	Soybean	plastid	77.49	68.76
CDY50512	Canola	nucleus	55.47	60.43
Bra021100.1-P	Field mustard	nucleus	57.46	59.23
CDY20122	Canola	nucleus	57.84	59.01
AT1G53090.1	Thale cress	nucleus	58.08	58.82
Solyc07g063120.2.1	Tomato	cytosol	60.7	58.8
CDY21834	Canola	nucleus, plastid	57.84	58.79
CDX97654	Canola	nucleus, plastid	58.08	58.74
CDX98548	Canola	nucleus, plastid	57.84	58.56
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	5.6	58.44
Bra027259.1-P	Field mustard	nucleus, plastid	57.71	58.44
VIT_19s0014g02660.t01	Wine grape	nucleus	66.04	58.22
AT3G15354.3	Thale cress	nucleus	60.32	57.4
Solyc12g013840.1.1	Tomato	nucleus	59.95	55.92
Bra038098.1-P	Field mustard	nucleus	22.51	55.69
PGSC0003DMT400039600	Potato	cytosol	59.95	55.53
GSMUA_Achr3P31750_001	Banana	nucleus	51.37	53.78
TraesCS3D01G284500.2	Wheat	cytosol	51.49	53.77
TraesCS3B01G318600.1	Wheat	cytosol	51.37	53.71
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	50.62	53.27
TraesCS3A01G284700.2	Wheat	cytosol	51.24	53.16
OQU87453	Sorghum	cytosol	50.75	53.12
Zm00001d043592_P004	Maize	cytosol	51.99	52.84
Zm00001d011746_P002	Maize	nucleus	51.49	51.81
CDY25880	Canola	nucleus	28.73	50.11
GSMUA_Achr1P13700_001	Banana	nucleus	47.64	49.74
Os01t0725800-01	Rice	nucleus	37.44	47.93
KRH25904	Soybean	mitochondrion	5.1	36.94
KRH60015	Soybean	plasma membrane	35.57	34.09
KRH73341	Soybean	nucleus	26.0	31.24
KRH14801	Soybean	nucleus	26.0	30.96
KRH06512	Soybean	nucleus	35.95	28.25
KRH47949	Soybean	nucleus	36.07	28.02
KRH41290	Soybean	nucleus	35.82	27.85
KRH27856	Soybean	nucleus	37.81	27.07
KRH77627	Soybean	nucleus	37.56	26.75

Protein Annotations

EntrezGene:100784064	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	EMBL:ACUP02003944	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_06G242100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	UniProt:I1KDV9
InterPro:IPR000719	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:KRH55274.1	EnsemblPlants:KRH55275
ProteinID:KRH55275	ProteinID:KRH55275.1	ProteinID:KRH55276.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50011	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44218
PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112	UniParc:UPI000233A445
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

hypothetical protein

Coordinates

chr6:-:40160664..40168428

Molecular Weight (calculated)

89963.6 Da

IEP (calculated)

5.251

GRAVY (calculated)

-0.260

Length

804 amino acids

Sequence
(BLAST)

001: MGDISLRLWL DKPERSVNVF ECLHIFREIV EIVHAAHSQG IVVHNVRPSC FVMSAFNHVW LIESATCSHS GSDTLEEAVE IKTPTPTSIH DMHQRRCLGS
101: EDFVPVKTST ASLTDSSCML SSVVFLAPAS SVDDTEENKM KNRRKDEEVA GKKQSFPTKQ VLQMETSWYT SPEEVAGTSL PSCASDVYQL GVLLFELFCP
201: LISREEKRRT MSSLRHRVLP PQLLLKWPKE ASFCLWLLHP EPNSRPTIGE LLQSEFLNEP RDDIEKCEAV VEIGERIDDQ ELLLEFLSLI QQKKGEAAEK
301: LQHTISFLCS DIEEATKQKT VFKEMTSTEL GSDDCSTSSF PSITVVGNED SACLGTRKRV RTIPCVDDTD TEGCECDSNM VDDQKNDTSI LSKTPRFLNN
401: LKKLESAYFL TRCKSAYSSR KLVVQDSPID ITDEKGSVVV AERNCANKVE LKEMSREGKS LWTNPFLEGL CKYLSFSKLK VKADLKQGDL LQSSNLVCSL
501: SFDRDAEFFA TAGVNKKIKV FECNTTINEY RDIHYPVVEM VSRSTLSSTC WNTYIKSQIA SSNFEGVVQL WDVTRSQVQS EMKEHERRVW SIDFSSADPT
601: LLASGSDDGS VKLWNINQGV SVGTIKTKAN VCCVQFPLDF AHFLAFGSAD HQIYYYDLRN LKVPLCAMVG HDKTVSYIKF VDTMSLVSAS TDNTLKLWDL
701: SMCASRVIDS PIQSFTGHKN VKNFVGLSVS DGYIATGSET NEVFIYHKAF PMPALSFKFY SSDPLSGNEE DDSAQFITSV CWRGQSSTLV AANSTGNVKI
801: LQMT

Best Arabidopsis Sequence Match ( AT1G53090.1 )
(BLAST)

001: MKGSSESSSR GLNNTSGVSE FCTDGSKSLS HIDYVRSLLG SHKEANLGGL DDDSIVRALE CEDVSLRQWL DNPDRSVDAF ECFHVFRQIV EIVNAAHSQG
101: IVVHNVRPSC FVMSSFNNVS FIESASCSDS GSDEDATTKS REIGSSRQEE ILSERRSKQQ EEVKKQPFPM KQILAMEMSW YTSHEEDNGS LCNCASDIYR
201: LGVLLFELFC PVSSREEKSR TMSSLRHRVL PPQILLNWPK EASFCLWLLH PEPSCRPSMS ELLQSEFINE PRENLEEREA AMELRDRIEE QELLLEFLFL
301: IQQRKQEAAD KLQDTISLLS SDIDQVVKRQ LVLQQKGRDV RSFLASRKRI RQGAETTAAE EENDDNSIDE ESKLDDTLES TLLESSRLMR NLKKLESVYF
401: ATRYRQIKAA TAAEKPLARY YSALSCNGRS SEKSSMSQPS KDPINDSRQG GWIDPFLEGL CKYLSFSKLR VKADLKQGDL LNSSNLVCAI GFDRDGEFFA
501: TAGVNKKIKI FECESIIKDG RDIHYPVVEL ASRSKLSGIC WNSYIKSQVA SSNFEGVVQV WDVARNQLVT EMKEHEKRVW SIDYSSADPT LLASGSDDGS
601: VKLWSINQGV SIGTIKTKAN ICCVQFPSET GRSLAFGSAD HKVYYYDLRN PKLPLCTMIG HHKTVSYVRF VDSSTLVSSS TDNTLKLWDL SMSISGINET
701: PLHSFMGHTN VKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVLSYKFK TIDPVSELEV DDASQFISSV CWRGQSSTLV AANSTGNIKI LEMV

Arabidopsis Description

SPA4SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.