CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021100.1-P	Field mustard	nucleus	98.35	99.36
CDY21834	Canola	nucleus, plastid	96.19	95.83
CDX98548	Canola	nucleus, plastid	87.31	86.65
CDX97654	Canola	nucleus, plastid	87.31	86.54
AT3G15354.3	Thale cress	nucleus	89.72	83.67
CDY50512	Canola	nucleus	69.54	74.25
CDY25880	Canola	nucleus	39.59	67.68
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	6.22	63.64
KRH55271	Soybean	cytosol	10.03	62.2
Solyc07g063120.2.1	Tomato	cytosol	63.58	60.36
KRH26155	Soybean	cytosol	58.5	58.5
VIT_19s0014g02660.t01	Wine grape	nucleus	67.01	57.89
KRH55275	Soybean	cytosol	59.01	57.84
KRH27246	Soybean	plastid	65.48	56.89
KRH22086	Soybean	plastid	64.85	56.4
Solyc12g013840.1.1	Tomato	nucleus	61.68	56.38
PGSC0003DMT400039600	Potato	cytosol	61.42	55.76
TraesCS3D01G284500.2	Wheat	cytosol	54.06	55.32
TraesCS3B01G318600.1	Wheat	cytosol	53.93	55.27
TraesCS3A01G284700.2	Wheat	cytosol	53.93	54.84
OQU87453	Sorghum	cytosol	53.43	54.82
GSMUA_Achr3P31750_001	Banana	nucleus	53.05	54.43
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	52.54	54.19
Zm00001d043592_P004	Maize	cytosol	54.19	53.98
Zm00001d011746_P002	Maize	nucleus	53.93	53.19
GSMUA_Achr1P13700_001	Banana	nucleus	50.25	51.43
Os01t0725800-01	Rice	nucleus	38.71	48.57
CDY19171	Canola	cytosol	14.72	46.03
CDX79494	Canola	cytosol	5.2	39.81
CDY32590	Canola	cytosol	15.1	33.62
CDY38909	Canola	cytosol	14.97	33.52
CDY16865	Canola	nucleus	15.23	32.34
CDX83371	Canola	nucleus	36.04	31.8
CDX87159	Canola	cytosol	14.72	31.35
CDY52540	Canola	nucleus	26.52	30.87
CDX95691	Canola	nucleus	35.79	30.85
CDY12145	Canola	nucleus	26.4	30.77
CDX86817	Canola	nucleus	36.17	29.41
CDY40851	Canola	nucleus	36.68	29.4
CDY42035	Canola	nucleus	36.04	28.89
CDX80009	Canola	nucleus	36.04	28.69

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.2	GO:A0A078G573
UniProt:A0A078G573	EnsemblPlants:CDY20122	ProteinID:CDY20122	ProteinID:CDY20122.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00009978001	InterPro:IPR000719	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:Kinase-like_dom_sf	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50011	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom
SMART:SM00220	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112	UniParc:UPI0004EE6CB2	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA01g28800DBnaA01g28800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G573]

Coordinates

chrLK032103:+:261319..265149

Molecular Weight (calculated)

88043.3 Da

IEP (calculated)

6.388

GRAVY (calculated)

-0.331

Length

788 amino acids

Sequence
(BLAST)

001: MEGSSNSNSR GFSDRNTEFP PVDECVRSMF GSSTHKPSSS EEDSLGVDPF VRSLEWGDVS LRQWLDKPER SVDVLECLHV FRQIVEIVNA AHSQGIVVHN
101: VKPSCFVMSS FNHVSFIESA SCSDSGSEDG QKEEKGSYNK ILERQIEKLE EEKKQRCFPM KHVLAMETSW YTSPEEEFGS PSTCASDVYR LGVLLFELFC
201: PVTSREEKSR IMSSLRHRVL PPQILLKCHK EASFCLWLLH PEPTCRPSMS DLLQSDFITE PRDNLVEHEA AIELRDRIEE QESLLEFMLL IQQRKQDSAC
301: SLRDTISLLS SDIEQVVKRQ LILKKQGSSY SDLSKDDHQS PSGPSTLLAS RKRFRQVIPQ VETDVEVDEE SQGSTLLESS RLMRNFKKLE TVYFLTRRRQ
401: MKAAALGKSL TRHSPLSSEN GRGGSMISSV SNPVSNNDPL RQGGWIDPFL EGLCKYLSFS KLRVKADLKQ GDLLNSSNLV CALAFDRDGE LFATAGVNKK
501: IKIFEYNSIV NSNRDIHYPV VELASRSRLS SVCWNSYIKS QIASSNFEGV VQIWDVARSQ LVTEMKEHKK RVWSIDISSA DPTLLASGSD DGTVKLWILR
601: IGVSIGTIKT KANICCVQFP SDSGRSLAFG SADHKVYYYD LRNPKIPLST MVGHNKTVSN VKFVDSSTLV SSSTDNTLKL WDLSMSASGV NETPLHSFAG
701: HTNLKNFVGL SVSDGYIATG SETNEVFVYH KAFPMPVMSY MFSNTDSLPG LEIDDASQFI SSICWRGQSS TLVAANSNGN IKILEMVA

Best Arabidopsis Sequence Match ( AT3G15354.3 )
(BLAST)

001: MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT

Arabidopsis Description

SPA3Protein SPA1-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.