CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021818.1-P	Field mustard	cytosol	47.22	100.0
CDX79494	Canola	cytosol	25.4	62.14
CDY52540	Canola	nucleus	88.89	33.09
CDY12145	Canola	nucleus	88.49	32.99
VIT_12s0059g01420.t01	Wine grape	nucleus	76.98	28.7
GSMUA_AchrUn_...	Banana	nucleus	69.84	27.54
GSMUA_Achr3P20130_001	Banana	nucleus	73.02	27.22
Zm00001d052138_P004	Maize	nucleus	73.41	26.97
TraesCS6B01G356400.1	Wheat	nucleus	73.81	26.84
Zm00001d018207_P001	Maize	nucleus	73.41	26.7
KXG31183	Sorghum	nucleus, plastid	73.41	26.62
TraesCS6D01G305800.1	Wheat	nucleus	73.81	26.61
TraesCS6A01G326100.1	Wheat	nucleus	73.81	26.57
Os02t0771100-01	Rice	nucleus	72.22	26.57
CDY16865	Canola	nucleus	33.33	22.64
CDY38909	Canola	cytosol	31.35	22.44
CDX87159	Canola	cytosol	32.94	22.43
CDY32590	Canola	cytosol	31.35	22.32
CDY50512	Canola	nucleus	46.83	15.99
CDY20122	Canola	nucleus	46.03	14.72
CDY21834	Canola	nucleus, plastid	45.63	14.54
CDX98548	Canola	nucleus, plastid	44.05	13.98
CDX97654	Canola	nucleus, plastid	43.65	13.84
CDY40851	Canola	nucleus	46.03	11.8
CDX86817	Canola	nucleus	44.84	11.66
CDX83371	Canola	nucleus	41.27	11.65
CDX95691	Canola	nucleus	40.08	11.05
CDX80009	Canola	nucleus	41.27	10.51
CDY42035	Canola	nucleus	40.87	10.48
CDY25880	Canola	nucleus	6.75	3.69

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:18.4.16	Gene3D:2.130.10.10	UniProt:A0A078G1I7
EnsemblPlants:CDY19171	ProteinID:CDY19171	ProteinID:CDY19171.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0016740	GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00006462001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44080
PANTHER:PTHR44080:SF2	SMART:SM00320	SUPFAM:SSF50978	UniPathway:UPA00143	UniParc:UPI0004EE8E35	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

BnaA04g19110DBnaA04g19110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1I7]

Coordinates

chrLK032092:+:683491..684800

Molecular Weight (calculated)

28247.2 Da

IEP (calculated)

6.411

GRAVY (calculated)

-0.286

Length

252 amino acids

Sequence
(BLAST)

001: MKECRDDELF ATAGVSRCIK VFDFSSVVNE PADIQCPISY KSSTTPLKYS FHELVLWSSS DDCKVKVWCT RQEESVLNID MKSNICCVKY NPGSGNFIAV
101: GSADHHIYHY DLRNISQPLH VFSGHKKAVS YVKFLSNNEL ASASTDSTLR LWDVKDNLPV RTFRGHTNEK NFVGLTVNSE YLACGSETNE VYVYHKEITR
201: PVTSHRFGTP EMDNAEEEVG SYFISAVCWK SDSPTMLTAN SQGTIKVLVL AA

Best Arabidopsis Sequence Match ( AT2G32950.2 )
(BLAST)

001: MCQKLHRPWI SFGKHYKGQG CDVSIKEVDN LLTLLAERKR KMEQEEAERN MQILLDFLHC LRKQKVDELN EVQTDLQYIK EDINAVERHR IDLYRARDRY
101: SVKLRMLGDD PSTRNAWPHE KNQIGFNSNS LSIRGGNFVG NYQNKKVEGK AQGSSHGLPK KDALSGSDSQ SLNQSTVSMA RKKRIHAQFN DLQECYLQKR
201: RQLADQPNSK QENDKSVVRR EGYSNGLADF QSVLTTFTRY SRLRVIAEIR HGDIFHSANI VSSIEFDRDD ELFATAGVSR CIKVFDFSSV VNEPADMQCP
301: IVEMSTRSKL SCLSWNKHEK NHIASSDYEG IVTVWDVTTR QSLMEYEEHE KRAWSVDFSR TEPSMLVSGS DDCKVKVWCT RQEASVINID MKANICCVKY
401: NPGSSNYIAV GSADHHIHYY DLRNISQPLH VFSGHKKAVS YVKFLSNNEL ASASTDSTLR LWDVKDNLPV RTFRGHTNEK NFVGLTVNSE YLACGSETNE
501: VYVYHKEITR PVTSHRFGSP DMDDAEEEAG SYFISAVCWK SDSPTMLTAN SQGTIKVLVL AA

Arabidopsis Description

COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.