Factsheet for Bra021818.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19171	Canola	cytosol	100.0	47.22
Bra026485.1-P	Field mustard	cytosol	27.73	16.67
Bra005541.1-P	Field mustard	nucleus	92.44	16.44
GSMUA_AchrUn_...	Banana	nucleus	75.63	14.08
VIT_12s0059g01420.t01	Wine grape	nucleus	78.99	13.91
GSMUA_Achr3P20130_001	Banana	nucleus	77.31	13.61
Os02t0771100-01	Rice	nucleus	75.63	13.14
Zm00001d018207_P001	Maize	nucleus	76.47	13.13
TraesCS6B01G356400.1	Wheat	nucleus	76.47	13.13
KXG31183	Sorghum	nucleus, plastid	76.47	13.09
TraesCS6D01G305800.1	Wheat	nucleus	76.47	13.02
TraesCS6A01G326100.1	Wheat	nucleus	76.47	13.0
Zm00001d052138_P004	Maize	nucleus	74.79	12.97
Bra029131.1-P	Field mustard	cytosol	34.45	11.92
Bra021100.1-P	Field mustard	nucleus	49.58	7.56
Bra027259.1-P	Field mustard	nucleus, plastid	47.9	7.18
Bra035252.1-P	Field mustard	nucleus	50.42	6.12
Bra000420.1-P	Field mustard	nucleus	45.38	5.67
Bra004545.1-P	Field mustard	nucleus	45.38	5.35
Bra038098.1-P	Field mustard	nucleus	11.76	4.31

Protein Annotations

EnsemblPlants:Bra021818.1	EnsemblPlants:Bra021818.1-P	EnsemblPlantsGene:Bra021818	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR44080	PANTHER:PTHR44080:SF2
SUPFAM:SSF50978	UniParc:UPI0002545107	UniProt:M4DZ71	MapMan:35.1	:	:

Description

AT2G32950 (E=6e-049) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase

Coordinates

chrA04:+:14685958..14687267

Molecular Weight (calculated)

13270.6 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.250

Length

119 amino acids

Sequence
(BLAST)

001: MKECRDDELF ATAGVSRCIK VFDFSSVRTF RGHTNEKNFV GLTVNSEYLA CGSETNEVYV YHKEITRPVT SHRFGTPEMD NAEEEVGSYF ISAVCWKSDS
101: PTMLTANSQG TIKVLVLAA

Best Arabidopsis Sequence Match ( AT2G32950.1 )
(BLAST)

001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA

Arabidopsis Description

COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.