Factsheet for Bra026485.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16865	Canola	nucleus	100.0	53.37
CDX87159	Canola	cytosol	99.49	53.24
AT5G23730.1	Thale cress	nucleus	96.97	52.17
Bra029131.1-P	Field mustard	cytosol	61.11	35.17
Solyc11g005190.1.1	Tomato	cytosol	57.07	31.39
PGSC0003DMT400015453	Potato	cytosol	57.58	30.81
Bra021818.1-P	Field mustard	cytosol	16.67	27.73
Zm00001d014990_P001	Maize	cytosol	45.96	21.88
TraesCS6A01G039200.1	Wheat	plastid	44.95	21.81
TraesCS6D01G045000.1	Wheat	plastid	44.95	21.81
TraesCS6B01G054100.1	Wheat	plastid	44.44	21.46
GSMUA_Achr9P23670_001	Banana	cytosol	27.78	21.15
GSMUA_Achr4P11950_001	Banana	mitochondrion	29.8	19.8
OQU84205	Sorghum	plastid	45.96	18.31
VIT_16s0050g00020.t01	Wine grape	cytosol	65.66	16.88
Bra005541.1-P	Field mustard	nucleus	31.82	9.42
Bra021100.1-P	Field mustard	nucleus	34.85	8.85
Bra027259.1-P	Field mustard	nucleus, plastid	35.35	8.82
Bra000420.1-P	Field mustard	nucleus	37.88	7.87
Bra035252.1-P	Field mustard	nucleus	38.38	7.76
Bra004545.1-P	Field mustard	nucleus	38.89	7.62
Bra038098.1-P	Field mustard	nucleus	0.0	0.0
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra026485	EnsemblPlants:Bra026485.1	EnsemblPlants:Bra026485.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009628	GO:GO:0009658	GO:GO:0009987
GO:GO:0010224	GO:GO:0016043	GO:GO:0043496	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4ECH5	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR45389	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002546FAE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

AT5G23730 (E=3e-107) | nucleotide binding

Coordinates

chrA01:+:9057545..9058141

Molecular Weight (calculated)

21725.9 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.203

Length

198 amino acids

Sequence
(BLAST)

001: MQVWDPRCPP EESVGVVRPA GLCRSAVCCV EFDPSGGHAV AVGCADRRGY VYDMRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR
101: VIRTYEGHVN NRNFVGLSVW RNGALFGCGS ENNRVFVYDR RWRKPVWVDG FEPVGMTSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP

Best Arabidopsis Sequence Match ( AT5G23730.1 )
(BLAST)

001: MNTLHPHKQQ QEQAQQQEEA RYEWDLSLST VVSSSSSSAS DVIGAIEFDP TDNIVATAGI SRKIRFYGLP SLLRNNAVSG TGVSFVDQAT ACEYYICTPA
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP

Arabidopsis Description

RUP2WD repeat-containing protein RUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.