Factsheet for PGSC0003DMT400015453

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g005190.1.1	Tomato	cytosol	89.46	91.94
Bra029131.1-P	Field mustard	cytosol	54.86	59.01
Bra026485.1-P	Field mustard	cytosol	30.81	57.58
CDY38909	Canola	cytosol	54.05	56.82
AT5G23730.1	Thale cress	nucleus	56.22	56.52
CDX87159	Canola	cytosol	56.49	56.49
CDY32590	Canola	cytosol	53.24	55.65
CDY16865	Canola	nucleus	55.41	55.26
AT5G52250.1	Thale cress	cytosol, plastid	54.59	52.47
GSMUA_Achr9P23670_001	Banana	cytosol	35.14	50.0
GSMUA_Achr4P11950_001	Banana	mitochondrion	34.59	42.95
TraesCS6D01G045000.1	Wheat	plastid	42.16	38.24
TraesCS6A01G039200.1	Wheat	plastid	41.89	37.99
TraesCS6B01G054100.1	Wheat	plastid	41.62	37.56
Zm00001d014990_P001	Maize	cytosol	42.16	37.5
OQU84205	Sorghum	plastid	43.51	32.39
VIT_16s0050g00020.t01	Wine grape	cytosol	59.73	28.7
PGSC0003DMT400036075	Potato	nucleus	26.49	15.01
PGSC0003DMT400034706	Potato	nucleus	26.76	14.37
PGSC0003DMT400039600	Potato	cytosol	28.92	12.33
PGSC0003DMT400049874	Potato	nucleus	30.0	10.95
PGSC0003DMT400031699	Potato	cytosol	11.89	5.01
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.27	1.72

Protein Annotations

EntrezGene:102602733	MapMan:18.4.16	Gene3D:2.130.10.10	MapMan:26.1.3.3	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1A622	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400006033	PGSC:PGSC0003DMG400006033	EnsemblPlants:PGSC0003DMT400015453	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR45389	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029544A2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006351197.1	:	:

Description

Ubiquitin ligase protein cop1 [Source:PGSC_GENE;Acc:PGSC0003DMG400006033]

Coordinates

chr11:-:8066048..8069392

Molecular Weight (calculated)

41238.1 Da

IEP (calculated)

6.110

GRAVY (calculated)

-0.350

Length

370 amino acids

Sequence
(BLAST)

001: MTDISSILHQ DQEEEKARCE WDFHLSTIIS SCNSLSGSGC DTIGVLEFDP CGNFLASGGI ARKIRIYAVK SLLQEREEGE KRTSTGAPLA LDHGNACDFF
101: MCTPAKLGSL KWKPGLGGRV LGSGDYDGVV MEYDLEKKMP VFERDEHGGR RVWSIDYCHS DPVLGASGSD DGTMQMWDPR CGDNGKCLAM VQPTKEYSTP
201: VCCVEFNPFK GPIVAVGCAD RRVYAYDMRK MVDPLFILDG HQKAVTYIRF IDERTIISSS IDGCLKMWNA EDQKVLRTYK GHNNSRRFVG LSIWKPGGLI
301: CCGSESNQVF VYDKRWGEPI WVYGREPIGL TGIEHGFVSS VCWQQKDENQ CTLVAGDSDG VLRVFNGKRR

Best Arabidopsis Sequence Match ( AT5G23730.1 )
(BLAST)

001: MNTLHPHKQQ QEQAQQQEEA RYEWDLSLST VVSSSSSSAS DVIGAIEFDP TDNIVATAGI SRKIRFYGLP SLLRNNAVSG TGVSFVDQAT ACEYYICTPA
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP

Arabidopsis Description

RUP2WD repeat-containing protein RUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.