Factsheet for PGSC0003DMT400049874

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g011690.2.1	Tomato	nucleus	95.46	95.0
KRH25904	Soybean	mitochondrion	5.92	54.05
VIT_15s0046g01310.t01	Wine grape	nucleus	50.1	47.39
GSMUA_Achr11P...	Banana	cytosol	37.48	46.12
CDX83371	Canola	nucleus	40.14	45.58
CDX95691	Canola	nucleus	40.04	44.42
Bra000420.1-P	Field mustard	nucleus	40.93	43.55
CDY42035	Canola	nucleus	41.42	42.73
CDX80009	Canola	nucleus	41.62	42.63
KRH06512	Soybean	nucleus	42.9	42.52
GSMUA_Achr1P28310_001	Banana	nucleus	42.31	42.06
Bra004545.1-P	Field mustard	nucleus	41.62	41.78
AT2G46340.2	Thale cress	nucleus	42.31	41.69
KRH47949	Soybean	nucleus	42.41	41.55
GSMUA_Achr8P05740_001	Banana	nucleus	43.49	41.14
EES19971	Sorghum	cytosol	41.22	37.06
Zm00001d039072_P005	Maize	cytosol	40.73	36.81
Os05t0571000-01	Rice	cytosol	40.63	36.01
Zm00001d009617_P017	Maize	mitochondrion	39.84	35.25
PGSC0003DMT400039600	Potato	cytosol	29.78	34.79
TraesCS1D01G417600.1	Wheat	cytosol	41.32	32.94
PGSC0003DMT400031699	Potato	cytosol	27.71	32.0
PGSC0003DMT400036075	Potato	nucleus	20.32	31.55
HORVU1Hr1G090080.3	Barley	cytosol	40.93	31.09
PGSC0003DMT400015453	Potato	cytosol	10.95	30.0
PGSC0003DMT400034706	Potato	nucleus	20.22	29.75

Protein Annotations

EntrezGene:102593062	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.2	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009637	GO:GO:0009640
GO:GO:0009658	GO:GO:0009791	GO:GO:0009987	GO:GO:0010017	GO:GO:0010100	GO:GO:0010114
GO:GO:0010218	GO:GO:0016043	GO:GO:0016301	GO:GO:0016604	GO:GO:0016740	GO:GO:0019538
GO:GO:0042802	GO:GO:0048575	GO:GO:2000028	InterPro:IPR000719	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:Kinase-like_dom_sf	UniProt:M1BPG6	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400019379	PGSC:PGSC0003DMG400019379
EnsemblPlants:PGSC0003DMT400049874	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50011	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44218	PANTHER:PTHR44218:SF3	InterPro:Prot_kinase_dom	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112
UniParc:UPI000294EE96	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_006358642.1	RefSeq:XP_015169521.1	SEG:seg	:	:	:

Description

Ubiquitin ligase protein cop1 [Source:PGSC_GENE;Acc:PGSC0003DMG400019379]

Coordinates

chr10:+:5916607..5926093

Molecular Weight (calculated)

113273.0 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.490

Length

1014 amino acids

Sequence
(BLAST)

0001: MDKSKEEAEA NDVGANVLSR TRECDSGEPS MRKCTSTSHE LPEGSTSASS GMLETDGMNR NVTSMKGPQL HGTSSYSRLT VEKLCNYKIS EPASLRCSNN
0101: QETNQKPQIQ WQRFYQLGSG SRSVKGDGDP SSTDKAVQQL SSKELPGINL LALKMLKQAS DKDIKEGSNA VSSQSTEDHN LIIPSNRFLP GSSQSKLLST
0201: SSFSHFFANR SLKGKDVLPK GPALHKEVHT ASTLQNKNEF EQAFTGMVSS DALFKQGANS NQASFSRSDH QRPTSTYNGV TLREWLNSTG SQINKAERIH
0301: IFRQIVKLID IAHSEGNAFQ DIRPSCFILL SPNGVKYIGP SVQIDSMYAV SRNTNGKRPS HMEMHANSNL GSKLQKVNVD VDFMRQQPET NARSSRDEGT
0401: SFQAGCLLES DINQLEKKWY TCPEELNHES LASSNIYSLG VLFFELLCCF ESPAAHSTAM LNLQSRILPP NFLCQNPKEV GFCFLLLHPV PSSRPTTREI
0501: LQSELIIGAE EVCKIDGVPS FIEKDDDPDS DVLLYFLDSL QEEKKNNTSK LLQRIECLEA DIKDVEKREV LRNSDWVETD FNNMRQGSYL KHLNSTDSIS
0601: RSFSIPNMSN EKLMKNISQL ESAYFCMRSQ IQLAENDTIG RTDTDLLTSR DRSFQVSTKE AEPILKSVDR VGAFFEGICK YARYCKFEEY GTLRNGDLLN
0701: STNVICSLCF DYEEDFIAAA GVSKKIKIFE FASLLNESAD LQYPVAEMSN RSKLSCVSWN KYMRNYLAST DYDGVVKMWD ASTGQEFSQH TEHQKRAWSV
0801: DFSQVEPTKF ATGSDDCSVK VWNINERSSV DTIWNPANIC CVQFSAYSSH LLAFGSADYK IYCYDLRHTR IPWCTLSGHE KAVSYVKFLD YGTLVSASTD
0901: NTLKLWDLKR TSLEGLSSNA CSLTFKGHTN EKNFVGLSVL DGYIACGSES NEVYAYHRSL PMQITSYKFG SVDPSSGNDG ESNGQFVSSV CWRRKSNMVV
1001: AANSTGCIKL LRLV

Best Arabidopsis Sequence Match ( AT2G46340.2 )
(BLAST)

0001: MPVMERVAEE TVATNNIQLK ARVDDVPCNK LDARHNDMVI QSETANSDCP GSSAHRNVDL TKPPPPEEAA GAKLSVEELT LGNYRIVQGS NNTNVDSPRA
0101: GKFEHLYRLA RGSAFRAGDG DLDSQPRDMD QMLSRIRQQL AGAPSERQNL KPFMSRRSDQ NLEAFSERLR AAGENSIMNA PALISEGVQM KTPVSSSNFS
0201: QLLLKRAMKG KGVVGKNQET PPEFVSDQDL GSKEKKLDIS KSPTPHDVLP LKSSPKGNGM VSHGDGNHSK SSIGISLREF LRSSYAKREK RHGLCLFRQL
0301: VELVDSAHSK RLFLLDLRPS LFTLVPSKKL RYIGNFGKND LESDVDEDLN RRRPVVEESS SGGRDSKKRK MDLHLNSPGN QLQATSTGRP FKRKSPVIDL
0401: NMVDARNPDS CELQQQDYIK NLSVSSVSRK QSMSTWLEEQ WYTCPEEING EDIGEKSNIY ALGVLLFELL CHCESGEMHA AMMADLRHRI LPPTFLSKYP
0501: KEAGFCLWLL HPEPSSRPSA RDILKSELIC EDDSVKSTAA AEEISELLLH FLSSLEVQKK KKASKLLQDI QTLEDDIKEA ERRYSSNVSL VRSHGAIEKR
0601: VQSSPLDEHC TTSSALFVPT ANTDRLMSNI RQLEDAYFFM RSQINLSSSA ATARSDKTLK DRDRCSENQN ENQDMSTKGK SSDQLEVFFE GLCKFARYSK
0701: FETCGTIRSG DLLNSASVVC SLSFDPDEEH IAAAGISKKI KIFDFNAFMN ESVGVHYPLV EMVNKSKLSC VCWNSYIKNY LASTDYDGVV QIWDAGTGQG
0801: FSQYTEHQKR AWSVDFSPSD PTKFVSGSDD CSVKLWSINE KRSLGTIWSP ANVCCVQFSS YSNHLLAFGS ADYKVYCYDL RYVKTPWCTL AGHEKAVSYV
0901: KFMDSETIVS ASTDNSLKLW NLNKTNSSGL SPGACSLTYK GHTNQKNFVG LSVLDGYIAC GSETNEVYSY YKSLPMPMTS YKFGSVDPIS GNEYFDDNGQ
1001: FVSSVCWRKK SNMLVAANST GNMKLLKLV

Arabidopsis Description

SPA1SPA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VSM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.