Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g013840.1.1 | Tomato | nucleus | 97.35 | 98.03 |
| KRH55271 | Soybean | cytosol | 9.56 | 65.35 |
| CDY50512 | Canola | nucleus | 55.3 | 65.04 |
| VIT_19s0014g02660.t01 | Wine grape | nucleus | 66.94 | 63.71 |
| AT1G53090.1 | Thale cress | nucleus | 57.72 | 63.1 |
| Bra027259.1-P | Field mustard | nucleus, plastid | 57.03 | 62.34 |
| GSMUA_Achr1P13690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 5.53 | 62.34 |
| CDX98548 | Canola | nucleus, plastid | 56.8 | 62.09 |
| CDX97654 | Canola | nucleus, plastid | 56.8 | 62.01 |
| Bra021100.1-P | Field mustard | nucleus | 55.41 | 61.67 |
| CDY20122 | Canola | nucleus | 55.76 | 61.42 |
| CDY21834 | Canola | nucleus, plastid | 55.88 | 61.31 |
| KRH26155 | Soybean | cytosol | 55.18 | 60.79 |
| KRH27246 | Soybean | plastid | 63.36 | 60.64 |
| AT3G15354.3 | Thale cress | nucleus | 58.53 | 60.12 |
| KRH22086 | Soybean | plastid | 62.67 | 60.04 |
| KRH55275 | Soybean | cytosol | 55.53 | 59.95 |
| Bra038098.1-P | Field mustard | nucleus | 21.66 | 57.85 |
| GSMUA_Achr3P31750_001 | Banana | nucleus | 50.92 | 57.55 |
| TraesCS3D01G284500.2 | Wheat | cytosol | 51.04 | 57.53 |
| TraesCS3B01G318600.1 | Wheat | cytosol | 50.92 | 57.48 |
| TraesCS3A01G284700.2 | Wheat | cytosol | 50.92 | 57.03 |
| OQU87453 | Sorghum | cytosol | 50.46 | 57.03 |
| HORVU3Hr1G068840.2 | Barley | cytosol, mitochondrion | 49.54 | 56.28 |
| Zm00001d043592_P004 | Maize | cytosol | 51.04 | 56.01 |
| CDY25880 | Canola | nucleus | 29.72 | 55.97 |
| Zm00001d011746_P002 | Maize | nucleus | 51.15 | 55.57 |
| GSMUA_Achr1P13700_001 | Banana | nucleus | 48.04 | 54.16 |
| Os01t0725800-01 | Rice | nucleus | 37.44 | 51.75 |
| PGSC0003DMT400036075 | Potato | nucleus | 24.54 | 32.62 |
| PGSC0003DMT400034706 | Potato | nucleus | 25.12 | 31.64 |
| PGSC0003DMT400049874 | Potato | nucleus | 34.79 | 29.78 |
| PGSC0003DMT400015453 | Potato | cytosol | 12.33 | 28.92 |
| PGSC0003DMT400031699 | Potato | cytosol | 21.89 | 21.64 |
Protein Annotations
| MapMan:18.4.16 | MapMan:19.2.2.8.3.4.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004672 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006464 |
| GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 |
| GO:GO:0019538 | InterPro:IPR000719 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Kinase-like_dom_sf |
| UniProt:M1B8I4 | PFAM:PF00400 | EnsemblPlantsGene:PGSC0003DMG400015319 | PGSC:PGSC0003DMG400015319 | EnsemblPlants:PGSC0003DMT400039600 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50011 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44218 | PANTHER:PTHR44218:SF1 |
| InterPro:Prot_kinase_dom | SMART:SM00320 | SUPFAM:SSF50978 | SUPFAM:SSF56112 | UniParc:UPI000294F199 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
Ubiquitin ligase protein cop1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015319]
Coordinates
chr12:-:597737..607412
Molecular Weight (calculated)
96768.9 Da
IEP (calculated)
6.439
GRAVY (calculated)
-0.456
Length
868 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSSQSGRE RSESSRGLNS SGVVDWNSRF RSASTIRLSS DASHDSGFVS KEWERIGSSD VNCFKDQGLR GIDRKDVSLR HWLDNPERTV DALECMHIFT
101: QIVEIVKLAH TQGIAVHNVR PSCFVMSSFN RVAFIESASC SDSGSDSCED EPNSSSSPLQ LEMIPGKDSA IASESSCLQS SSGHLVQTLE ASKNRQEEEN
201: NKHTFPMKQI LHLETNWYTS PEEVNDAPGT CASDIYRLGV LLFELYCTFN SSDAKIANMS CLRHRVLPPQ LLLKWSKEAS FCLWLLHPDP SSRPKVGELL
301: ESEFLKTPRH DLEEREAAIE LREKIDEQEL LLEFLLLIQQ KKQEAVENLH EIVSFLSSDV EEATKMQTTL KLKGGSSVEP AEEATEMQTP LKMKGGSSLE
401: PAKHLNSRRT NITVDHDSGS SGSRKRSRPS TGEESDGHPD ESQKFERHIE NKSSISSKSS RLMKNFRKLE AAYFMTRRRV IKRDKSMSRN CQTSPECKSS
501: ATATERSSLS NLSSKGGCNG DRQRGWINSY LEGLCKYFSF SKLEVKADLK QGDLLNPSNL VCSLSFDRDG EFFATAGVNK KIKVFEYNSI LNADRDIHYP
601: VVEMANRSKL SSICWNGYIK SQLASSNFEG VVQVWDVTRS QLFMEMREHE KRVWSVDFSL ADPTMLASGS DDGSVKLWNI NQGVSVGTIK TKANVCCVQF
701: PVDSGRALAF GSADHKIYYY DLRNSKLPLC TLIGHNKTVS YVKFIDSTTL VSASTDNTIK LWDLSTCTSR ILDSPLQSFT GHMNVKNFVG LSVSDGYIAT
801: GSETNEVVIY HKAFPMPALS FKFNCTDPLS GDEVEDSAQF ISSVCWRGQS PTLVAANSMG NIKLLEMV
101: QIVEIVKLAH TQGIAVHNVR PSCFVMSSFN RVAFIESASC SDSGSDSCED EPNSSSSPLQ LEMIPGKDSA IASESSCLQS SSGHLVQTLE ASKNRQEEEN
201: NKHTFPMKQI LHLETNWYTS PEEVNDAPGT CASDIYRLGV LLFELYCTFN SSDAKIANMS CLRHRVLPPQ LLLKWSKEAS FCLWLLHPDP SSRPKVGELL
301: ESEFLKTPRH DLEEREAAIE LREKIDEQEL LLEFLLLIQQ KKQEAVENLH EIVSFLSSDV EEATKMQTTL KLKGGSSVEP AEEATEMQTP LKMKGGSSLE
401: PAKHLNSRRT NITVDHDSGS SGSRKRSRPS TGEESDGHPD ESQKFERHIE NKSSISSKSS RLMKNFRKLE AAYFMTRRRV IKRDKSMSRN CQTSPECKSS
501: ATATERSSLS NLSSKGGCNG DRQRGWINSY LEGLCKYFSF SKLEVKADLK QGDLLNPSNL VCSLSFDRDG EFFATAGVNK KIKVFEYNSI LNADRDIHYP
601: VVEMANRSKL SSICWNGYIK SQLASSNFEG VVQVWDVTRS QLFMEMREHE KRVWSVDFSL ADPTMLASGS DDGSVKLWNI NQGVSVGTIK TKANVCCVQF
701: PVDSGRALAF GSADHKIYYY DLRNSKLPLC TLIGHNKTVS YVKFIDSTTL VSASTDNTIK LWDLSTCTSR ILDSPLQSFT GHMNVKNFVG LSVSDGYIAT
801: GSETNEVVIY HKAFPMPALS FKFNCTDPLS GDEVEDSAQF ISSVCWRGQS PTLVAANSMG NIKLLEMV
001: MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT
Arabidopsis Description
SPA3Protein SPA1-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.