CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97654	Canola	nucleus, plastid	94.46	94.34
CDY21834	Canola	nucleus, plastid	87.15	87.48
CDY20122	Canola	nucleus	86.65	87.31
AT3G15354.3	Thale cress	nucleus	88.54	83.2
CDY50512	Canola	nucleus	69.9	75.2
CDY25880	Canola	nucleus	40.05	68.98
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	6.3	64.94
KRH55271	Soybean	cytosol	10.08	62.99
Solyc07g063120.2.1	Tomato	cytosol	63.1	60.36
KRH26155	Soybean	cytosol	58.31	58.76
VIT_19s0014g02660.t01	Wine grape	nucleus	66.88	58.22
KRH27246	Soybean	plastid	66.12	57.88
KRH55275	Soybean	cytosol	58.56	57.84
Solyc12g013840.1.1	Tomato	nucleus	62.22	57.31
KRH22086	Soybean	plastid	65.37	57.28
PGSC0003DMT400039600	Potato	cytosol	62.09	56.8
GSMUA_Achr3P31750_001	Banana	nucleus	54.28	56.12
TraesCS3D01G284500.2	Wheat	cytosol	53.9	55.58
TraesCS3B01G318600.1	Wheat	cytosol	53.78	55.53
OQU87453	Sorghum	cytosol	53.4	55.21
TraesCS3A01G284700.2	Wheat	cytosol	53.78	55.1
Zm00001d043592_P004	Maize	cytosol	54.03	54.24
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	52.14	54.19
Zm00001d011746_P002	Maize	nucleus	53.53	53.19
GSMUA_Achr1P13700_001	Banana	nucleus	50.63	52.21
Os01t0725800-01	Rice	nucleus	38.66	48.89
CDY19171	Canola	cytosol	13.98	44.05
CDX79494	Canola	cytosol	4.79	36.89
CDX83371	Canola	nucleus	36.4	32.36
CDY32590	Canola	cytosol	14.36	32.2
CDY38909	Canola	cytosol	14.23	32.1
CDY16865	Canola	nucleus	14.99	32.08
CDX95691	Canola	nucleus	36.02	31.29
CDX87159	Canola	cytosol	14.48	31.08
CDY52540	Canola	nucleus	26.07	30.58
CDY12145	Canola	nucleus	25.94	30.47
CDX86817	Canola	nucleus	36.9	30.24
CDY40851	Canola	nucleus	36.78	29.7
CDY42035	Canola	nucleus	36.27	29.3
CDX80009	Canola	nucleus	36.27	29.09

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.2	GO:A0A078EGV8
EnsemblPlants:CDX98548	ProteinID:CDX98548	ProteinID:CDX98548.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00106201001	InterPro:IPR000719	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:Kinase-like_dom_sf	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50011	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	SMART:SM00220	SMART:SM00320	SUPFAM:SSF50978
SUPFAM:SSF56112	UniParc:UPI0004EF3D33	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

BnaC05g38270D

Coordinates

chrLK031905:-:922762..926062

Molecular Weight (calculated)

88529.2 Da

IEP (calculated)

6.096

GRAVY (calculated)

-0.407

Length

794 amino acids

Sequence
(BLAST)

001: MEDSSNSNSR GFLNTSGVSD RNTEFSPLER VTPRSKPLSV FGSSAHKSSE EDSLGIDDPF VRSLEWGDVS LRQWLDKPER CVDVFECLHV FRQIVEIVNV
101: AHSQGIVVHN VRPSCFVMSS FNHVSFIESA SCSDSGSGDS LEDGPVSHKK REDAGSYNNI LERQVEKLEE EKKQPFPMKH VLAMETSWYT SPEEEFGSTS
201: TCASDVYRLG VLLFELFCPV PSREDKSRTM SSLRHRVLPP QILLKCPKEA SFCLWLLHPE PSCRPSMSDL LQSEFMTEPR DNLEEREAAI ELRDKIEEQE
301: SLLEFLLMIQ QRKQESAYRL RDTVSLLSSD IEQVAKRQLV LKQKGSSYSD LGFLEEPSTL LASRKRFRQV IPPEETDDDE SQGRSTFLES SRLMRNFKKL
401: ETIYFLTRRR QLKAAASGKS LTRHSPLSSE NGRGSEKSSV SNSAAPKDLS QNDSRQGGWI DPFLEGLCKY LSFSKLRVKA DLKRGDLLNS SNLVCSLAFD
501: RDGEFFATAG VNKKIKIFEC DSIVNNNQDI HYPVVELASR SKLSSVCWNS YIKSQIASSN FEGVVQIWDV GRSQLVTEMK EHKKRVWSIN ISSADPTLLA
601: SGSDDGTGAS IGTIKTKANV CCVQFPSDSG RSLAFGSADH KVYYYDLRNP KIPLSTMVGH GKTVSYVKFV DSSTLVSSST DNTLKLWDLS MSASGVNETP
701: LHSFAGHTNL KNFVGLSVSD GYIATGSETN EVFVYHKAFP MPVMSYMFSN TDSTSGLEVD DASQFISSIC WRGQSSTLVA ANSNGNIKIL EMVA

Best Arabidopsis Sequence Match ( AT3G15354.1 )
(BLAST)

001: MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT GVSIGTIKTK ANVCCVQFPS DSGRSLAFGS ADHKVYYYDL RNPKIPLCTM
701: IGHSKTVSYV KFVDSSTLVS SSTDNTLKLW DLSMSASGIN ESPLHSFTGH TNLKNFVGLS VSDGYIATGS ETNEVFVYHK AFPMPVMSYM FNNTDSMSGL
801: EVDDASQFIS SICWRGQSST LVAANSNGNI KILEMMT

Arabidopsis Description

SPA3Protein SPA1-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.