Factsheet for GSMUA_Achr1P13690_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 1
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P13690_001
GSMUA_Achr1P13700_001
GSMUA_Achr3P20130_001
GSMUA_Achr3P28130_001
GSMUA_Achr3P31750_001
GSMUA_Achr4P18680_001
GSMUA_Achr9P22690_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	GSMUA_Achr1P13690_001	AT1G53090.1	18812498
AT1G53090.1	GSMUA_Achr1P13700_001	AT1G53090.1	18812498
AT1G53090.1	GSMUA_Achr3P31750_001	AT1G53090.1	18812498
AT1G53090.1	GSMUA_Achr3P20130_001	AT2G32950.1	12887588
AT1G53090.1	GSMUA_AchrUn_...	AT2G32950.1	12887588
AT1G53090.1	GSMUA_Achr3P20130_001	AT2G32950.1	18812498
AT1G53090.1	GSMUA_AchrUn_...	AT2G32950.1	18812498
AT1G53090.1	GSMUA_Achr3P20130_001	AT2G32950.1	21798944
AT1G53090.1	GSMUA_AchrUn_...	AT2G32950.1	21798944
AT1G53090.1	GSMUA_Achr3P28130_001	AT5G15850.1	16854975
AT1G53090.1	GSMUA_Achr4P18680_001	AT5G15850.1	16854975
AT1G53090.1	GSMUA_Achr9P22690_001	AT5G15850.1	16854975
AT1G53090.1	GSMUA_Achr3P28130_001	AT5G15850.1	18812498
AT1G53090.1	GSMUA_Achr4P18680_001	AT5G15850.1	18812498
AT1G53090.1	GSMUA_Achr9P22690_001	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55271	Soybean	cytosol	57.14	34.65
CDY50512	Canola	nucleus	68.83	7.18
GSMUA_Achr3P31750_001	Banana	nucleus	68.83	6.9
AT1G53090.1	Thale cress	nucleus	70.13	6.8
GSMUA_Achr9P23670_001	Banana	cytosol	22.08	6.54
Bra027259.1-P	Field mustard	nucleus, plastid	66.23	6.42
CDX97654	Canola	nucleus, plastid	66.23	6.42
Bra021100.1-P	Field mustard	nucleus	64.94	6.41
CDY21834	Canola	nucleus, plastid	64.94	6.32
CDX98548	Canola	nucleus, plastid	64.94	6.3
CDY20122	Canola	nucleus	63.64	6.22
VIT_12s0028g03570.t01	Wine grape	cytosol	68.83	5.94
KRH26155	Soybean	cytosol	59.74	5.84
AT3G15354.3	Thale cress	nucleus	63.64	5.8
KRH22086	Soybean	plastid	67.53	5.74
KRH27246	Soybean	plastid	67.53	5.73
GSMUA_Achr4P11950_001	Banana	mitochondrion	22.08	5.7
Solyc07g063120.2.1	Tomato	cytosol	61.04	5.66
KRH55275	Soybean	cytosol	58.44	5.6
Solyc12g013840.1.1	Tomato	nucleus	62.34	5.57
PGSC0003DMT400039600	Potato	cytosol	62.34	5.53
VIT_19s0014g02660.t01	Wine grape	nucleus	61.04	5.15
GSMUA_Achr3P20130_001	Banana	nucleus	42.86	4.88
GSMUA_Achr11P...	Banana	cytosol	51.95	4.85
GSMUA_AchrUn_...	Banana	nucleus	40.26	4.85
GSMUA_Achr1P28310_001	Banana	nucleus	50.65	3.82
GSMUA_Achr8P05740_001	Banana	nucleus	46.75	3.36
GSMUA_Achr1P13700_001	Banana	nucleus	22.08	2.21
CDY25880	Canola	nucleus	2.6	0.43
Bra038098.1-P	Field mustard	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P13690_001	EnsemblPlants:GSMUA_Achr1T13690_001	EnsemblPlantsGene:GSMUA_Achr1G13690_001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	UniParc:UPI000294D54A
UniProt:M0RZM7	MapMan:35.1	:	:	:	:

Description

Protein SPA1-RELATED 4 [Source:GMGC_GENE;Acc:GSMUA_Achr1G13690_001]

Coordinates

chr1:-:10435198..10435431

Molecular Weight (calculated)

8543.2 Da

IEP (calculated)

7.385

GRAVY (calculated)

0.031

Length

77 amino acids

Sequence
(BLAST)

1: MLSASHNCCP HRLVQVFIYH KAFPMPVLSY KFSTTDPISG QENDDASQFV SCVCWRGQSS TLLAANSSGN IKFLEMV

Best Arabidopsis Sequence Match ( AT1G53090.4 )
(BLAST)

001: MSSLRHRVLP PQILLNWPKE ASFCLWLLHP EPSCRPSMSE LLQSEFINEP RENLEEREAA MELRDRIEEQ ELLLEFLFLI QQRKQEAADK LQDTISLLSS
101: DIDQVVKRQL VLQQKGRDVR SFLASRKRIR QGAETTAAEE ENDDNSIDEE SKLDDTLEST LLESSRLMRN LKKLESVYFA TRYRQIKAAT AAEKPLARYY
201: SALSCNGRSS EKSSMSQPSK DPINDSRQGG WIDPFLEGLC KYLSFSKLRV KADLKQGDLL NSSNLVCAIG FDRDGEFFAT AGVNKKIKIF ECESIIKDGR
301: DIHYPVVELA SRSKLSGICW NSYIKSQVAS SNFEGVVQVW DVARNQLVTE MKEHEKRVWS IDYSSADPTL LASGSDDGSV KLWSINQGVS IGTIKTKANI
401: CCVQFPSETG RSLAFGSADH KVYYYDLRNP KLPLCTMIGH HKTVSYVRFV DSSTLVSSST DNTLKLWDLS MSISGINETP LHSFMGHTNV KNFVGLSVSD
501: GYIATGSETN EVFVYHKAFP MPVLSYKFKT IDPVSELEVD DASQFISSVC WRGQSSTLVA ANSTGNIKIL EMV

Arabidopsis Description

SPA4SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.