Factsheet for GSMUA_Achr4P11950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23670_001	Banana	cytosol	65.1	74.62
Bra029131.1-P	Field mustard	cytosol	46.64	40.41
CDY38909	Canola	cytosol	46.31	39.2
CDY32590	Canola	cytosol	45.97	38.7
AT5G23730.1	Thale cress	nucleus	47.32	38.32
CDY16865	Canola	nucleus	47.65	38.27
CDX87159	Canola	cytosol	46.98	37.84
AT5G52250.1	Thale cress	cytosol, plastid	46.64	36.1
Solyc11g005190.1.1	Tomato	cytosol	43.29	35.83
PGSC0003DMT400015453	Potato	cytosol	42.95	34.59
TraesCS6D01G045000.1	Wheat	plastid	46.31	33.82
TraesCS6A01G039200.1	Wheat	plastid	46.31	33.82
TraesCS6B01G054100.1	Wheat	plastid	46.31	33.66
Zm00001d014990_P001	Maize	cytosol	46.64	33.41
Bra026485.1-P	Field mustard	cytosol	19.8	29.8
OQU84205	Sorghum	plastid	49.33	29.58
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	5.7	22.08
VIT_16s0050g00020.t01	Wine grape	cytosol	47.32	18.31
GSMUA_AchrUn_...	Banana	nucleus	20.13	9.39
GSMUA_Achr3P20130_001	Banana	nucleus	20.81	9.17
GSMUA_Achr3P31750_001	Banana	nucleus	20.81	8.07
GSMUA_Achr11P...	Banana	cytosol	21.14	7.65
GSMUA_Achr1P28310_001	Banana	nucleus	22.48	6.57
GSMUA_Achr1P13700_001	Banana	nucleus	16.78	6.49
GSMUA_Achr8P05740_001	Banana	nucleus	21.14	5.88
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	1.01	5.17

Protein Annotations

EnsemblPlants:GSMUA_Achr4P11950_001	EnsemblPlants:GSMUA_Achr4T11950_001	EnsemblPlantsGene:GSMUA_Achr4G11950_001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR45389	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295FB6A	UniProt:M0SN60
MapMan:35.1	:	:	:	:	:

Description

suppressor of phythchrome A, putative [Source:GMGC_GENE;Acc:GSMUA_Achr4G11950_001]

Coordinates

chr4:-:8720409..8721647

Molecular Weight (calculated)

32842.4 Da

IEP (calculated)

6.857

GRAVY (calculated)

-0.440

Length

298 amino acids

Sequence
(BLAST)

001: MRPEISHYHS LIGPRPLRLL HRSFKHHPQS PFLYERAMST SPHHEPAQQQ RGGSVVAALE EEKEEKARCE WDFWLSTVVS PSTAAGEVSD AIGAIEFDPT
101: DRLLATGGIA RKIRIYSLGT LLPESRDSSL TFSDHSTACL LCICTPAKLS SLRWRPDSSG RTVGSGDYDG VVTEYDVERN VAVFERDEHA GRRWADGREV
201: RAYRGHVNSR SFVGMSVWRG AGLVGSGSES NEVFVYDLRW QEPIWVRGFG PRREEGGAFV GAVSWRQAVS GPGEGALVAG GSDGVLQVFV GRKKTESE

Best Arabidopsis Sequence Match ( AT5G52250.1 )
(BLAST)

001: MEALFCSEIP NNNIRSSIND LSSSSSYTWP MIMTSSSSSS SSPTIMNIEN IPRCDWDLSL SAVVSSASTG SDAIGAIEFD PTGEIIATGG IARKIRSYRL
101: SSLLESRDDH VTASESYICT PAKLSSLKWR PDFSGRVIGS GDYDGVVTEY DVEKQVPVSE RDEHGGRRIW SVDYTLYNGS LIGASGSDDG TVQMWDPRNG
201: GTLEETVRPG GGAAICSVEF DPFGGSSIAV GCADRNAYVY DIRRLVDPLI VLDGHTKTVT YARFMDSHTI VTGSTDGSLK QWDIDNGRRV VRTYRGHVNS
301: RNFVGLSVWR HGGLVVSGSE NNQVFVYDKR WEEPVWVCGL GHTNRFGSDR RFVSSVCLRQ VDEDWCTLVA GGSDGALEIF SGKQS

Arabidopsis Description

RUP1WD repeat-containing protein RUP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTJ6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.