Factsheet for Zm00001d014990_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G054100.1	Wheat	plastid	67.79	68.78
TraesCS6D01G045000.1	Wheat	plastid	67.31	68.63
OQU84205	Sorghum	plastid	81.73	68.41
TraesCS6A01G039200.1	Wheat	plastid	67.07	68.38
GSMUA_Achr9P23670_001	Banana	cytosol	32.69	52.31
Bra029131.1-P	Field mustard	cytosol	40.14	48.55
CDY38909	Canola	cytosol	40.38	47.73
CDY32590	Canola	cytosol	39.9	46.89
GSMUA_Achr4P11950_001	Banana	mitochondrion	33.41	46.64
Bra026485.1-P	Field mustard	cytosol	21.88	45.96
CDX87159	Canola	cytosol	40.38	45.41
AT5G23730.1	Thale cress	nucleus	40.14	45.38
CDY16865	Canola	nucleus	40.38	45.28
AT5G52250.1	Thale cress	cytosol, plastid	39.66	42.86
PGSC0003DMT400015453	Potato	cytosol	37.5	42.16
Solyc11g005190.1.1	Tomato	cytosol	36.3	41.94
VIT_16s0050g00020.t01	Wine grape	cytosol	40.38	21.82
Zm00001d011892_P001	Maize	cytosol	6.01	20.0
Zm00001d052138_P004	Maize	nucleus	21.39	12.97
Zm00001d018207_P001	Maize	nucleus	21.39	12.84
Zm00001d016202_P001	Maize	cytosol	3.61	11.63
Zm00001d043592_P004	Maize	cytosol	21.39	11.25
Zm00001d011746_P002	Maize	nucleus	21.15	11.01
Zm00001d009617_P017	Maize	mitochondrion	22.84	8.29
Zm00001d039072_P005	Maize	cytosol	22.36	8.29
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6GYL2	ProteinID:AQK67844.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFscan:PS50294
PANTHER:PTHR45389	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00022211BC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d014990	EnsemblPlants:Zm00001d014990_P001	EnsemblPlants:Zm00001d014990_T001	SEG:seg

Description

WD repeat-containing protein RUP2

Coordinates

chr5:-:71267717..71268967

Molecular Weight (calculated)

43334.3 Da

IEP (calculated)

6.318

GRAVY (calculated)

-0.297

Length

416 amino acids

Sequence
(BLAST)

001: MNATASSSSN SQAHDDADLP PRCEWDFRLA ATVPTTALPG ASDAIGSVDL DPTGRLLATG GIARKIRMYD VPSMLLPPPD SAGPAPAPAP AACICVPAKL
101: SSVRWRPDGG AAVGCGDYDG VVTEYDAERG VASWERDEHG GRRVWSLDYA PPGAPAAMAA SGSDDRTAHV WDPRAPSCGW ATARAGAAVL CVEFDPSGAP
201: HLAVGSADRR AHVYDVRALG RGAVHVARME GHARAVTYVR WAGPGPAERR RVVTSAADGT HRLWEWPPGT SEQGAAAREV RSYSGHASAR SFVGMGVWRG
301: AGLVASGSES NHVFVYDLRW AKPIWVQPFA SHGPVTIGPE QVDAHAPAAG AGAGGFVSAV AWRQGSHSDD PDGGALVAGG SDGVLKVFTC RRRRGVMAMD
401: TDCTPPPDSD EAEDKN

Best Arabidopsis Sequence Match ( AT5G23730.1 )
(BLAST)

001: MNTLHPHKQQ QEQAQQQEEA RYEWDLSLST VVSSSSSSAS DVIGAIEFDP TDNIVATAGI SRKIRFYGLP SLLRNNAVSG TGVSFVDQAT ACEYYICTPA
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP

Arabidopsis Description

RUP2WD repeat-containing protein RUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.