Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016202_P001 | Maize | cytosol | 49.6 | 48.06 |
| Zm00001d018207_P001 | Maize | nucleus | 88.0 | 15.87 |
| Zm00001d052138_P004 | Maize | nucleus | 85.6 | 15.6 |
| Zm00001d043592_P004 | Maize | cytosol | 51.2 | 8.09 |
| Zm00001d011746_P002 | Maize | nucleus | 49.6 | 7.76 |
| Zm00001d014990_P001 | Maize | cytosol | 20.0 | 6.01 |
| Zm00001d009617_P017 | Maize | mitochondrion | 44.8 | 4.89 |
| Zm00001d039072_P005 | Maize | cytosol | 43.2 | 4.81 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A1D6G4Q6 | ProteinID:AQK98269.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0016874 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFscan:PS50294 | PANTHER:PTHR44080 | PANTHER:PTHR44080:SF2 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000842EB5F |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d011892 | EnsemblPlants:Zm00001d011892_P001 |
| EnsemblPlants:Zm00001d011892_T001 | : | : | : | : | : |
Description
E3 ubiquitin-protein ligase COP1
Coordinates
chr8:+:164115327..164117277
Molecular Weight (calculated)
14440.0 Da
IEP (calculated)
4.791
GRAVY (calculated)
-0.406
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MWRMRGVPDS RVETGDCIEF DRDDELFATA GVSKCIKVFE FSTVVNEPSD VHCPVVEMAT RSKLSCLSWN KYSKNIIASS DYEGIVTVWD IQTRQSVMEY
101: EEHEKRAWSV DFSRTDSSMH LMVRS
101: EEHEKRAWSV DFSRTDSSMH LMVRS
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.