Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011892_P001 | Maize | cytosol | 48.06 | 49.6 |
| Zm00001d052138_P004 | Maize | nucleus | 58.14 | 10.93 |
| Zm00001d018207_P001 | Maize | nucleus | 56.59 | 10.53 |
| Zm00001d043592_P004 | Maize | cytosol | 42.64 | 6.95 |
| Zm00001d011746_P002 | Maize | nucleus | 41.86 | 6.76 |
| Zm00001d039072_P005 | Maize | cytosol | 39.53 | 4.55 |
| Zm00001d009617_P017 | Maize | mitochondrion | 40.31 | 4.54 |
| Zm00001d014990_P001 | Maize | cytosol | 11.63 | 3.61 |
Protein Annotations
| EnsemblPlants:Zm00001d016202_P001 | EnsemblPlants:Zm00001d016202_T001 | EnsemblPlantsGene:Zm00001d016202 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0016874 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR44080 |
| PANTHER:PTHR44080:SF2 | ProteinID:AQK70312.1 | SEG:seg | UniParc:UPI0008441F93 | UniProt:A0A1D6H693 | MapMan:35.1 |
Description
E3 ubiquitin-protein ligase COP1
Coordinates
chr5:+:150380818..150382317
Molecular Weight (calculated)
14194.1 Da
IEP (calculated)
4.917
GRAVY (calculated)
-0.046
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAADSAPTL EVLSPNILDL SSLPLKSLIM PLPGFEEVAA TEDLAITKKG VLPPLVAAQQ CRRRRIEFDR DDELFATDGV SKRIKVFEFS TVVNEPSDVH
101: CPVVEMATRS KLSCLSWNKY SKNIIASSD
101: CPVVEMATRS KLSCLSWNKY SKNIIASSD
001: MCQKLHRPWI SFGKHYKGQG CDVSIKEVDN LLTLLAERKR KMEQEEAERN MQILLDFLHC LRKQKVDELN EVQTDLQYIK EDINAVERHR IDLYRARDRY
101: SVKLRMLGDD PSTRNAWPHE KNQIGFNSNS LSIRGGNFVG NYQNKKVEGK AQGSSHGLPK KDALSGSDSQ SLNQSTVSMA RKKRIHAQFN DLQECYLQKR
201: RQLADQPNSK QENDKSVVRR EGYSNGLADF QSVLTTFTRY SRLRVIAEIR HGDIFHSANI VSSIEFDRDD ELFATAGVSR CIKVFDFSSV VNEPADMQCP
301: IVEMSTRSKL SCLSWNKHEK NHIASSDYEG IVTVWDVTTR QSLMEYEEHE KRAWSVDFSR TEPSMLVSGS DDCKVKVWCT RQEASVINID MKANICCVKY
401: NPGSSNYIAV GSADHHIHYY DLRNISQPLH VFSGHKKAVS YVKFLSNNEL ASASTDSTLR LWDVKDNLPV RTFRGHTNEK NFVGLTVNSE YLACGSETNE
501: VYVYHKEITR PVTSHRFGSP DMDDAEEEAG SYFISAVCWK SDSPTMLTAN SQGTIKVLVL AA
101: SVKLRMLGDD PSTRNAWPHE KNQIGFNSNS LSIRGGNFVG NYQNKKVEGK AQGSSHGLPK KDALSGSDSQ SLNQSTVSMA RKKRIHAQFN DLQECYLQKR
201: RQLADQPNSK QENDKSVVRR EGYSNGLADF QSVLTTFTRY SRLRVIAEIR HGDIFHSANI VSSIEFDRDD ELFATAGVSR CIKVFDFSSV VNEPADMQCP
301: IVEMSTRSKL SCLSWNKHEK NHIASSDYEG IVTVWDVTTR QSLMEYEEHE KRAWSVDFSR TEPSMLVSGS DDCKVKVWCT RQEASVINID MKANICCVKY
401: NPGSSNYIAV GSADHHIHYY DLRNISQPLH VFSGHKKAVS YVKFLSNNEL ASASTDSTLR LWDVKDNLPV RTFRGHTNEK NFVGLTVNSE YLACGSETNE
501: VYVYHKEITR PVTSHRFGSP DMDDAEEEAG SYFISAVCWK SDSPTMLTAN SQGTIKVLVL AA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.