Factsheet for TraesCS6D01G045000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G039200.1	Wheat	plastid	96.81	96.81
TraesCS6B01G054100.1	Wheat	plastid	95.83	95.37
Zm00001d014990_P001	Maize	cytosol	68.63	67.31
OQU84205	Sorghum	plastid	74.75	61.37
GSMUA_Achr9P23670_001	Banana	cytosol	31.62	49.62
Bra029131.1-P	Field mustard	cytosol	41.18	48.84
CDY38909	Canola	cytosol	41.42	48.01
CDY32590	Canola	cytosol	40.93	47.18
GSMUA_Achr4P11950_001	Banana	mitochondrion	33.82	46.31
Bra026485.1-P	Field mustard	cytosol	21.81	44.95
CDX87159	Canola	cytosol	39.95	44.05
AT5G23730.1	Thale cress	nucleus	39.71	44.02
AT5G52250.1	Thale cress	cytosol, plastid	41.18	43.64
CDY16865	Canola	nucleus	39.46	43.4
Solyc11g005190.1.1	Tomato	cytosol	37.75	42.78
PGSC0003DMT400015453	Potato	cytosol	38.24	42.16
VIT_16s0050g00020.t01	Wine grape	cytosol	41.91	22.21
TraesCS6D01G305800.1	Wheat	nucleus	22.55	13.16
TraesCS3D01G284500.2	Wheat	cytosol	24.02	12.73
TraesCS1D01G417600.1	Wheat	cytosol	24.51	7.86
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.98	6.9

Protein Annotations

EnsemblPlants:TraesCS6D01G045000.1	EnsemblPlantsGene:TraesCS6D01G045000	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR45389	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	SEG:seg
SMART:SM00320	SUPFAM:SSF50978	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6D:+:20253905..20255131

Molecular Weight (calculated)

42742.3 Da

IEP (calculated)

6.047

GRAVY (calculated)

-0.309

Length

408 amino acids

Sequence
(BLAST)

001: MTNPSSPSSP SSSPTSAHHR QYQEPAASAA NVGNGGQVDH GISFPAAVDD VEGAELSPPR CEWEFRLAAT VPSPSLAGAS EAIGSVDFDP AGRLLATGGI
101: ARKVRIYGVA SLPSSPSPAA CICVPAKLSS VRWRPEEGGG RAVGCGDYDG VVTEYDVERG VAAWERDEHS GRRVWALDYA PRGGHTSMTA SGSDDRTAHV
201: WDPRAPSGSW ATARAGGAVL CVEFDPSGGP QLAVGSADRR AAVYDVRALG HGAVASMDGH ARAVTYVRWA PARRVVTSAA DGTHRLWEWP STPELSGPAR
301: EVRSYSGHVS GRSFVGMGLW RGAGLVASGS ESNHVFVYDL RWGKPVWVHP FDVASDSSSD AEGFVSAVTW LQGDADGGGA LVAGRSDGVL KMFTCQPRRG
401: DDHQVDDL

Best Arabidopsis Sequence Match ( AT5G23730.1 )
(BLAST)

001: MNTLHPHKQQ QEQAQQQEEA RYEWDLSLST VVSSSSSSAS DVIGAIEFDP TDNIVATAGI SRKIRFYGLP SLLRNNAVSG TGVSFVDQAT ACEYYICTPA
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP

Arabidopsis Description

RUP2WD repeat-containing protein RUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.