Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G326100.1 | Wheat | nucleus | 98.43 | 98.29 |
| TraesCS6B01G356400.1 | Wheat | nucleus | 97.14 | 97.98 |
| Os02t0771100-01 | Rice | nucleus | 86.41 | 88.18 |
| Zm00001d018207_P001 | Maize | nucleus | 85.98 | 86.72 |
| KXG31183 | Sorghum | nucleus, plastid | 86.12 | 86.62 |
| Zm00001d052138_P004 | Maize | nucleus | 84.55 | 86.15 |
| Bra021818.1-P | Field mustard | cytosol | 13.02 | 76.47 |
| VIT_10s0523g00030.t01 | Wine grape | nucleus | 65.67 | 76.25 |
| GSMUA_Achr3P20130_001 | Banana | nucleus | 73.1 | 75.59 |
| CDY19171 | Canola | cytosol | 26.61 | 73.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.81 | 73.08 |
| AT2G32950.1 | Thale cress | nucleus | 67.38 | 69.78 |
| Solyc12g005950.1.1 | Tomato | nucleus | 67.38 | 69.57 |
| KRH73341 | Soybean | nucleus | 66.38 | 69.36 |
| KRH14801 | Soybean | nucleus | 66.95 | 69.33 |
| CDY52540 | Canola | nucleus | 66.95 | 69.13 |
| CDY12145 | Canola | nucleus | 66.81 | 69.08 |
| Bra005541.1-P | Field mustard | nucleus | 65.95 | 68.91 |
| PGSC0003DMT400036075 | Potato | nucleus | 64.09 | 68.61 |
| VIT_12s0059g01420.t01 | Wine grape | nucleus | 65.24 | 67.46 |
| Solyc11g011980.1.1 | Tomato | nucleus | 64.52 | 67.11 |
| PGSC0003DMT400034706 | Potato | nucleus | 65.24 | 66.18 |
| CDX79494 | Canola | cytosol | 8.87 | 60.19 |
| TraesCS3D01G284500.2 | Wheat | cytosol | 31.47 | 28.57 |
| TraesCS6D01G045000.1 | Wheat | plastid | 13.16 | 22.55 |
| TraesCS1D01G417600.1 | Wheat | cytosol | 30.76 | 16.9 |
Protein Annotations
Description
No Description!
Coordinates
chr6D:+:414475174..414481042
Molecular Weight (calculated)
77640.6 Da
IEP (calculated)
6.757
GRAVY (calculated)
-0.435
Length
699 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSVAPAG ALVPSVPKPE HAPSAGDAAA QLQALAAAAA DDECAGASPS SSPGEGEGAG AAAEGADAAG DRDLLCPICM ALIKDAFLTA CGHSFCYMCI
101: VTHLNHKSDC PCCANYLTKA QLYPNFLLDK VVKKMSARQV AKTASPIDQF RHVVQQGNDM TVKELDSLMT LIAEKKRQME QQESETNMQI LLVFLHCLRK
201: QKLEELNEIQ TDLQYIKDDI SSVERHRLDL YRTKERYSMR LRMLLDEPAA SKMWPSPMDK PNSAFVPNSR APPSTSSPGG LNNRRFDLRA PASHQGHQRR
301: DALASSDPPN PPIQSGNVIA RKRRVQAQFN ELQEYYLQRR RTGAQSHRQE DVVAMNREGY HEGLEDFQSV LTTFTRYSRL RVIAELRHGD LFHSANIVSS
401: IEFDRDDELF ATAGVSKRIK VFEFSTVVNE PSDVHCPVVE MATRSKLSCL SWNKYSKNVI ASSDYEGIVT VWDVQTRQSV MEYEEHEKRA WSVDFSRTEP
501: KMLVSGSDDC KVKVWCTNQE ASAINIDMKA NICSVKYNPG SSYYVAVGSA DHHIHYFDLR NPSAPLHVFG GHKKAVSYVK FLSNNELASA STDSTLRLWD
601: VKDNCPLRTF RGHKNEKNFV GLSVNNEYIA CGSETNEVFV YHKAISKPAS SHRFLSTDLD DAEDDPGSYF ISAVCWKSDS PTMLTANSQG TIKVLVLAP
101: VTHLNHKSDC PCCANYLTKA QLYPNFLLDK VVKKMSARQV AKTASPIDQF RHVVQQGNDM TVKELDSLMT LIAEKKRQME QQESETNMQI LLVFLHCLRK
201: QKLEELNEIQ TDLQYIKDDI SSVERHRLDL YRTKERYSMR LRMLLDEPAA SKMWPSPMDK PNSAFVPNSR APPSTSSPGG LNNRRFDLRA PASHQGHQRR
301: DALASSDPPN PPIQSGNVIA RKRRVQAQFN ELQEYYLQRR RTGAQSHRQE DVVAMNREGY HEGLEDFQSV LTTFTRYSRL RVIAELRHGD LFHSANIVSS
401: IEFDRDDELF ATAGVSKRIK VFEFSTVVNE PSDVHCPVVE MATRSKLSCL SWNKYSKNVI ASSDYEGIVT VWDVQTRQSV MEYEEHEKRA WSVDFSRTEP
501: KMLVSGSDDC KVKVWCTNQE ASAINIDMKA NICSVKYNPG SSYYVAVGSA DHHIHYFDLR NPSAPLHVFG GHKKAVSYVK FLSNNELASA STDSTLRLWD
601: VKDNCPLRTF RGHKNEKNFV GLSVNNEYIA CGSETNEVFV YHKAISKPAS SHRFLSTDLD DAEDDPGSYF ISAVCWKSDS PTMLTANSQG TIKVLVLAP
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.