Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P20130_001 | Banana | nucleus | 80.23 | 71.45 |
| Solyc11g011980.1.1 | Tomato | nucleus | 78.41 | 70.24 |
| Zm00001d052138_P004 | Maize | nucleus | 79.24 | 69.53 |
| VIT_12s0059g01420.t01 | Wine grape | nucleus | 77.91 | 69.38 |
| Os02t0771100-01 | Rice | nucleus | 78.57 | 69.05 |
| KXG31183 | Sorghum | nucleus, plastid | 79.4 | 68.78 |
| Zm00001d018207_P001 | Maize | nucleus | 78.9 | 68.54 |
| PGSC0003DMT400034706 | Potato | nucleus | 78.24 | 68.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 71.76 | 67.61 |
| TraesCS6B01G356400.1 | Wheat | nucleus | 76.41 | 66.38 |
| TraesCS6D01G305800.1 | Wheat | nucleus | 76.25 | 65.67 |
| TraesCS6A01G326100.1 | Wheat | nucleus | 75.91 | 65.29 |
| VIT_02s0025g01110.t01 | Wine grape | cytosol, plastid | 18.94 | 47.3 |
| VIT_19s0014g02660.t01 | Wine grape | nucleus | 36.54 | 24.12 |
| VIT_12s0028g03570.t01 | Wine grape | cytosol | 34.55 | 23.29 |
| VIT_15s0046g01310.t01 | Wine grape | nucleus | 34.22 | 19.22 |
| VIT_16s0050g00020.t01 | Wine grape | cytosol | 18.11 | 14.16 |
| VIT_02s0025g01130.t01 | Wine grape | cytosol | 16.11 | 11.73 |
Protein Annotations
| EntrezGene:100246063 | wikigene:100246063 | MapMan:18.4.16 | MapMan:19.2.2.8.3.4.1 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.3.1 |
| ProteinID:CBI41056 | ProteinID:CBI41056.3 | ncoils:Coil | UniProt:D7UE91 | EMBL:FN596802 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| EntrezGene:LOC100246063 | wikigene:LOC100246063 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR44080 | PANTHER:PTHR44080:SF2 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0001BE5623 |
| ArrayExpress:VIT_10s0523g00030 | EnsemblPlantsGene:VIT_10s0523g00030 | EnsemblPlants:VIT_10s0523g00030.t01 | unigene:Vvi.4777 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002270330 | RefSeq:XP_002270330.2 | SEG:seg |
Description
No Description!
Coordinates
chr10:-:1190018..1198892
Molecular Weight (calculated)
68524.7 Da
IEP (calculated)
7.888
GRAVY (calculated)
-0.531
Length
602 amino acids
Sequence
(BLAST)
(BLAST)
001: MCIVTHLNNK NDCPCCGHFL TTNHLFPNFL LNKFLRKTSA RQIAKTATPF EHLRQALQQG CEVSVKELDS LMSLLVEKRR KMEQEEAETN MQILLDFLHC
101: LRKQKLEELN EIQTDLQYVK EDINAVERHR IDLYRSRERY SVKLRMLADD PIATKAWPSL TDKHSSGIIS SAHSTQGRMG AGSSQNKKAD VKAQVSSHGL
201: QRKDAYSGSD SHVTQSGLVV ARKRRLHAQF NDLQDCYLQK RRHWVRQQHK QEERDTNSSR EGYHAGLEDF QSVLTTFTRY SRLRVIAELR HGDLFHSANI
301: VSSIEFDRDD ELFATAGVSR RIKVFEFSSV VNEPADVHCP VVEMSTRSKL SCLSWNKYTK NHIASSDYEG IVTVWDVTTR QSVMEYEEHE KRAWSVDFSR
401: TEPSMLVSGS DDCKVKIWCT KQEASVLNID MKANICSVKY NPGSSIYVAV GSADHHIHYY DLRNISQPLH VFSGHRKAVS YVKFLSNNEL ASASTDSTLR
501: LWDVKENMPV RTFRGHSNEK NFVGLTVNSE YIACGSETNE VFAYHKAISK PAAWHRFGSS DLDDTDDDNG SYFISAVCWK SDSPTMLTAN SQGTIKVLVL
601: AA
101: LRKQKLEELN EIQTDLQYVK EDINAVERHR IDLYRSRERY SVKLRMLADD PIATKAWPSL TDKHSSGIIS SAHSTQGRMG AGSSQNKKAD VKAQVSSHGL
201: QRKDAYSGSD SHVTQSGLVV ARKRRLHAQF NDLQDCYLQK RRHWVRQQHK QEERDTNSSR EGYHAGLEDF QSVLTTFTRY SRLRVIAELR HGDLFHSANI
301: VSSIEFDRDD ELFATAGVSR RIKVFEFSSV VNEPADVHCP VVEMSTRSKL SCLSWNKYTK NHIASSDYEG IVTVWDVTTR QSVMEYEEHE KRAWSVDFSR
401: TEPSMLVSGS DDCKVKIWCT KQEASVLNID MKANICSVKY NPGSSIYVAV GSADHHIHYY DLRNISQPLH VFSGHRKAVS YVKFLSNNEL ASASTDSTLR
501: LWDVKENMPV RTFRGHSNEK NFVGLTVNSE YIACGSETNE VFAYHKAISK PAAWHRFGSS DLDDTDDDNG SYFISAVCWK SDSPTMLTAN SQGTIKVLVL
601: AA
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.