Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G305800.1 | Wheat | nucleus | 97.98 | 97.14 |
| TraesCS6A01G326100.1 | Wheat | nucleus | 97.69 | 96.71 |
| Os02t0771100-01 | Rice | nucleus | 86.58 | 87.59 |
| KXG31183 | Sorghum | nucleus, plastid | 86.44 | 86.19 |
| Zm00001d018207_P001 | Maize | nucleus | 86.15 | 86.15 |
| Zm00001d052138_P004 | Maize | nucleus | 84.7 | 85.57 |
| Bra021818.1-P | Field mustard | cytosol | 13.13 | 76.47 |
| VIT_10s0523g00030.t01 | Wine grape | nucleus | 66.38 | 76.41 |
| GSMUA_Achr3P20130_001 | Banana | nucleus | 73.3 | 75.15 |
| CDY19171 | Canola | cytosol | 26.84 | 73.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 67.1 | 72.77 |
| AT2G32950.1 | Thale cress | nucleus | 67.82 | 69.63 |
| Solyc12g005950.1.1 | Tomato | nucleus | 67.97 | 69.57 |
| KRH73341 | Soybean | nucleus | 66.96 | 69.36 |
| KRH14801 | Soybean | nucleus | 67.24 | 69.04 |
| CDY52540 | Canola | nucleus | 67.39 | 68.98 |
| CDY12145 | Canola | nucleus | 67.24 | 68.93 |
| Bra005541.1-P | Field mustard | nucleus | 66.38 | 68.76 |
| PGSC0003DMT400036075 | Potato | nucleus | 64.65 | 68.61 |
| VIT_12s0059g01420.t01 | Wine grape | nucleus | 65.8 | 67.46 |
| Solyc11g011980.1.1 | Tomato | nucleus | 65.08 | 67.11 |
| PGSC0003DMT400034706 | Potato | nucleus | 65.8 | 66.18 |
| CDX79494 | Canola | cytosol | 8.95 | 60.19 |
| TraesCS3B01G318600.1 | Wheat | cytosol | 31.89 | 28.74 |
| TraesCS6B01G054100.1 | Wheat | plastid | 13.28 | 22.44 |
Protein Annotations
Description
No Description!
Coordinates
chr6B:+:624795777..624801680
Molecular Weight (calculated)
77184.1 Da
IEP (calculated)
6.834
GRAVY (calculated)
-0.451
Length
693 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSVAPAG ALVPSVPKPE HAPSGGDPAA QLQALAAAAD DACAGASPSS SPEAAEGAEA DAAGDRDLLC PICMGLIKDA FLTACGHSFC YMCIVTHLNH
101: KSDCPCCANY LTKAQLYPNF LLDKVVKKMS ARQVAKTASP IDQFRHVVQQ GNDMTVKELD SLMTLIAEKK RQMEQQESET NMQILLVFLH CLRKQKLEEL
201: NEIQTDLQYI KDDISSVERH RLDLYRTKER YSMRLRMLLD EPAASKMWPS PMDKPSSPFV PNSRAPPSTS SPGGLSNRRF DLRAPASHQG HQRRDALASS
301: DPPNPPLQSG NVIARKRRVQ AQFNELQEYY LQRRRTGAQS HRQEDAVTMN REGYHEGLED FQSVLTTFTR YSRLRVIAEL RHGDLFHSAN IVSSIEFDRD
401: DELFATAGVS KRIKVFEFST VVNEPSDVHC PVVEMATRSK LSCLSWNKYS KNVIASSDYE GIVTVWDVQT RQSVMEYEEH EKRAWSVDFS RTEPKMLVSG
501: SDDCKVKVWC TNQEASAINI DMKANICSVK YNPGSSYYVA VGSADHHIHY FDLRNPSAPL HVFGGHKKAV SYVKFLSNNE LASASTDSTL RLWDVKDNCP
601: LRTFRGHKNE KNFVGLSVNN EYIACGSETN EVFVYHKAIS KPASSHRFLS TDLDDAEDDP GSYFISAVCW KSDSPTMLTA NSQGTIKVLV LAP
101: KSDCPCCANY LTKAQLYPNF LLDKVVKKMS ARQVAKTASP IDQFRHVVQQ GNDMTVKELD SLMTLIAEKK RQMEQQESET NMQILLVFLH CLRKQKLEEL
201: NEIQTDLQYI KDDISSVERH RLDLYRTKER YSMRLRMLLD EPAASKMWPS PMDKPSSPFV PNSRAPPSTS SPGGLSNRRF DLRAPASHQG HQRRDALASS
301: DPPNPPLQSG NVIARKRRVQ AQFNELQEYY LQRRRTGAQS HRQEDAVTMN REGYHEGLED FQSVLTTFTR YSRLRVIAEL RHGDLFHSAN IVSSIEFDRD
401: DELFATAGVS KRIKVFEFST VVNEPSDVHC PVVEMATRSK LSCLSWNKYS KNVIASSDYE GIVTVWDVQT RQSVMEYEEH EKRAWSVDFS RTEPKMLVSG
501: SDDCKVKVWC TNQEASAINI DMKANICSVK YNPGSSYYVA VGSADHHIHY FDLRNPSAPL HVFGGHKKAV SYVKFLSNNE LASASTDSTL RLWDVKDNCP
601: LRTFRGHKNE KNFVGLSVNN EYIACGSETN EVFVYHKAIS KPASSHRFLS TDLDDAEDDP GSYFISAVCW KSDSPTMLTA NSQGTIKVLV LAP
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.