Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G236700.1 | Wheat | nucleus | 93.22 | 95.82 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 95.59 | 95.59 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 83.73 | 80.19 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 53.9 | 71.3 |
| Zm00001d017383_P001 | Maize | nucleus | 70.17 | 71.13 |
| EES07547 | Sorghum | nucleus | 72.2 | 69.84 |
| Zm00001d051267_P001 | Maize | nucleus | 64.41 | 68.35 |
| Solyc01g009650.1.1 | Tomato | nucleus | 20.68 | 67.03 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 59.66 | 64.23 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 57.97 | 62.41 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 58.31 | 61.65 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 58.31 | 60.78 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 44.75 | 42.86 |
| Bra013900.1-P | Field mustard | nucleus | 30.85 | 42.33 |
| KRH35334 | Soybean | nucleus | 38.64 | 42.22 |
| KRH09018 | Soybean | nucleus | 40.34 | 40.89 |
| KRH38485 | Soybean | nucleus | 39.66 | 40.21 |
| PGSC0003DMT400037080 | Potato | nucleus | 36.61 | 38.85 |
| CDY64708 | Canola | nucleus | 33.22 | 37.98 |
| Bra018027.1-P | Field mustard | nucleus | 33.22 | 37.98 |
| Solyc03g025870.2.1 | Tomato | nucleus | 35.25 | 37.28 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 37.63 | 37.25 |
| CDY32589 | Canola | nucleus | 31.53 | 37.05 |
| CDY05881 | Canola | nucleus | 31.86 | 36.43 |
| TraesCS2B01G178000.1 | Wheat | nucleus | 24.07 | 36.41 |
| CDY50197 | Canola | nucleus | 30.85 | 36.4 |
| AT5G52260.1 | Thale cress | nucleus | 32.88 | 36.19 |
| AT3G48920.1 | Thale cress | nucleus | 31.53 | 35.63 |
| Bra029129.1-P | Field mustard | nucleus | 32.2 | 35.58 |
| CDY38910 | Canola | nucleus | 32.2 | 35.58 |
| CDX89413 | Canola | nucleus | 32.54 | 35.56 |
| CDX94440 | Canola | nucleus | 30.85 | 35.41 |
| KRG91494 | Soybean | nucleus | 39.66 | 35.14 |
| AT4G25560.1 | Thale cress | nucleus | 33.56 | 34.98 |
| CDX92718 | Canola | nucleus | 30.85 | 34.73 |
| TraesCS3B01G286500.1 | Wheat | nucleus | 30.17 | 31.67 |
| TraesCS7B01G244200.1 | Wheat | nucleus | 30.17 | 30.69 |
| TraesCS1B01G383800.1 | Wheat | nucleus | 29.15 | 29.86 |
| TraesCS1B01G383700.1 | Wheat | nucleus | 29.49 | 29.69 |
| TraesCS1B01G383900.1 | Wheat | nucleus | 28.47 | 29.07 |
| TraesCS1B01G383600.1 | Wheat | nucleus | 29.49 | 28.52 |
| TraesCS4B01G312100.1 | Wheat | nucleus | 24.07 | 27.2 |
| TraesCS3B01G280700.1 | Wheat | nucleus | 26.1 | 26.92 |
| TraesCS3B01G224500.1 | Wheat | nucleus | 27.8 | 26.45 |
| TraesCS3B01G109800.1 | Wheat | nucleus | 25.08 | 26.06 |
| TraesCS7B01G204800.1 | Wheat | nucleus | 29.49 | 25.22 |
| TraesCS2B01G177900.1 | Wheat | nucleus | 30.85 | 25.21 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 28.47 | 21.99 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 31.86 | 21.81 |
| Bra019154.1-P | Field mustard | nucleus | 32.54 | 20.82 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 27.12 | 20.51 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G265200.1 | EnsemblPlantsGene:TraesCS6B01G265200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:476841042..476843661
Molecular Weight (calculated)
31563.7 Da
IEP (calculated)
6.505
GRAVY (calculated)
-0.647
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKACDKPR PSYRKGLWSP EEDQKLRDYI LRHGHGCWSA LPAKAGLQRN GKSCRLRWIN YLRPGLKHGM FSPEEEETVM SLHAALGNKW SRIARHLPGR
101: TDNEVKNYWN SYLKKRVEGG KEAPNSPNRH AASSAAESDG SQSQSTGEVG AAQERAGRPS NSGSSEPPHE SSSADSSCLT VTEPPACRAH APVAPKVMFA
201: DWLNMDYIGG QVAAAAPGPE AAGVVGAGGG DHRQVMSQGS AQVDGPPGVE DPLHGGFGDS GTCWEFLEQL DSMDQMQAGG GFCDLLSVTE FFGLN
101: TDNEVKNYWN SYLKKRVEGG KEAPNSPNRH AASSAAESDG SQSQSTGEVG AAQERAGRPS NSGSSEPPHE SSSADSSCLT VTEPPACRAH APVAPKVMFA
201: DWLNMDYIGG QVAAAAPGPE AAGVVGAGGG DHRQVMSQGS AQVDGPPGVE DPLHGGFGDS GTCWEFLEQL DSMDQMQAGG GFCDLLSVTE FFGLN
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.