Factsheet for Bra019154.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005541.1-P
Bra032610.1-P
Bra033315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25560.1	Bra032610.1-P	AT1G02340.1	17699755
AT4G25560.1	Bra033315.1-P	AT1G02340.1	17699755
AT4G25560.1	Bra005541.1-P	AT2G32950.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50197	Canola	nucleus	53.58	98.8
CDX92718	Canola	nucleus	53.58	94.27
AT4G25560.1	Thale cress	nucleus	44.9	73.14
Bra013900.1-P	Field mustard	nucleus	34.06	73.02
Solyc01g009650.1.1	Tomato	nucleus	12.36	62.64
Bra029129.1-P	Field mustard	nucleus	35.14	60.67
GSMUA_Achr4P25340_001	Banana	nucleus	16.27	52.82
Bra018027.1-P	Field mustard	nucleus	20.82	37.21
KRH35334	Soybean	nucleus	21.69	37.04
TraesCS2A01G370700.1	Wheat	nucleus	21.91	36.46
KRH09018	Soybean	nucleus	22.99	36.43
KRH38485	Soybean	nucleus	22.99	36.43
Os04t0532800-01	Rice	nucleus	21.48	36.26
TraesCS2A01G370300.1	Wheat	nucleus	21.69	36.1
TraesCS2D01G366800.1	Wheat	nucleus	21.48	35.87
TraesCS2B01G387300.1	Wheat	nucleus	21.04	35.4
TraesCS2B01G387700.1	Wheat	nucleus	21.04	35.4
TraesCS2A01G370400.1	Wheat	nucleus	21.69	35.34
TraesCS2B01G387800.1	Wheat	nucleus	21.26	35.13
TraesCS2B01G387500.1	Wheat	nucleus	21.48	34.98
TraesCS2D01G366900.1	Wheat	nucleus	21.48	34.98
GSMUA_Achr4P11960_001	Banana	nucleus	18.66	34.96
PGSC0003DMT400037080	Potato	nucleus	21.04	34.89
TraesCS2D01G367000.1	Wheat	nucleus	21.26	34.88
Solyc03g025870.2.1	Tomato	nucleus	20.82	34.41
GSMUA_Achr4P29410_001	Banana	nucleus	20.39	33.69
GSMUA_Achr8P11340_001	Banana	nucleus	20.17	33.45
TraesCS6A01G236700.1	Wheat	nucleus	20.82	33.45
GSMUA_Achr2P11450_001	Banana	nucleus	22.13	33.12
Zm00001d051267_P001	Maize	nucleus	19.74	32.73
VIT_16s0050g00050.t01	Wine grape	nucleus	21.04	32.55
TraesCS6B01G265200.1	Wheat	nucleus	20.82	32.54
TraesCS6D01G219300.1	Wheat	nucleus	20.82	32.54
Zm00001d017383_P001	Maize	nucleus	20.39	32.3
EES11177	Sorghum	nucleus	20.61	31.88
HORVU6Hr1G060610.3	Barley	nucleus	21.26	31.82
HORVU2Hr1G091590.1	Barley	nucleus	20.82	31.58
HORVU6Hr1G060600.2	Barley	mitochondrion	15.18	31.39
GSMUA_Achr1P17480_001	Banana	nucleus	18.22	30.77
KRG91494	Soybean	nucleus	22.13	30.63
EES07547	Sorghum	nucleus	19.96	30.16
EES06150	Sorghum	nucleus	19.52	30.1
GSMUA_Achr4P05410_001	Banana	nucleus	18.87	30.0
TraesCS6B01G053100.1	Wheat	nucleus	19.52	29.22
HORVU6Hr1G007010.2	Barley	nucleus	19.52	28.75
Zm00001d014989_P001	Maize	nucleus	19.09	28.57
TraesCS6D01G043600.1	Wheat	nucleus	19.52	28.48
Bra034738.1-P	Field mustard	nucleus	17.79	27.89
Bra039339.1-P	Field mustard	nucleus	17.57	27.55
Bra008875.1-P	Field mustard	nucleus	15.84	26.07
Bra006166.1-P	Field mustard	nucleus	15.84	26.07
TraesCS6A01G037700.1	Wheat	nucleus	19.52	25.35
Bra030783.1-P	Field mustard	nucleus	18.87	25.22
Bra031669.1-P	Field mustard	nucleus	17.57	24.77
Bra036588.1-P	Field mustard	nucleus	17.79	24.48
Bra020016.1-P	Field mustard	nucleus	17.35	24.1
Bra036317.1-P	Field mustard	nucleus	17.14	23.51
Bra029696.1-P	Field mustard	nucleus	16.27	22.52
Bra021515.1-P	Field mustard	nucleus	17.35	22.47
Bra001284.1-P	Field mustard	nucleus	16.05	21.76
Bra027771.1-P	Field mustard	nucleus	16.49	20.77
Bra027389.1-P	Field mustard	nucleus	15.4	20.4
Bra027668.1-P	Field mustard	nucleus	16.27	20.33
Bra009910.1-P	Field mustard	nucleus	13.45	18.79
Bra020526.1-P	Field mustard	nucleus	16.7	17.5
Bra023380.1-P	Field mustard	nucleus	6.29	13.94

Protein Annotations

EnsemblPlants:Bra019154.1	EnsemblPlants:Bra019154.1-P	EnsemblPlantsGene:Bra019154	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF563	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002541145	UniProt:M4DRL1	MapMan:15.5.2.1	:	:

Description

AT4G25560 (E=2e-089) AtMYB18 | AtMYB18 (myb domain protein 18); DNA binding / transcription factor

Coordinates

chrA03:+:26020040..26029271

Molecular Weight (calculated)

52773.1 Da

IEP (calculated)

9.873

GRAVY (calculated)

-0.422

Length

461 amino acids

Sequence
(BLAST)

001: MLKTIAVERP KQRQRKGFWS PEEDEKLRSF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI NYLRPGLKRN MINAEEEEII LTFHSSLGNK WSRIAKFLPG
101: RTDNEIKNYW HSHLKKKWLK SQKLQHATSM STSSESLVAC GRRNPQTLIS NHVISFQPLP EKTSSSPSQE SNDNNNNYSC SSGPEIARLF FSEWFTSSDP
201: YFDHSSNLTD SNHIQTPNIQ GPASDYEESG DVNQFYYNEM VMMSNSNWTL NDVVFGSKRR RGRAGNSRLG TGIVRSSSEQ TGESVPPVKL FSARLSLTRL
301: VRLNKLSGIC RRICFLAGRF VRLVRNLDVL ERVYTIETQI MQIMDAIGIQ NRVVVVNVVW RCLETYQARN NFFSHNSKRF DEEFWLILNS SIDSATVIRP
401: QSLRLKLMEV LHENLLTMSL IALDFSYLPD VKVPGSVLLD EFQKAVTGME GADVLSSVKM F

Best Arabidopsis Sequence Match ( AT4G25560.1 )
(BLAST)

001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT

Arabidopsis Description

LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.