Factsheet for Bra027389.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97526	Canola	nucleus	97.13	99.7
CDY55231	Canola	nucleus	80.75	85.67
Bra021515.1-P	Field mustard	nucleus	81.32	79.49
AT3G13890.1	Thale cress	nucleus	81.32	77.11
PGSC0003DMT400087467	Potato	nucleus	36.21	45.82
VIT_09s0002g01670.t01	Wine grape	nucleus	39.66	44.66
KRH47101	Soybean	nucleus	44.54	44.03
KRH44125	Soybean	nucleus	43.97	43.84
KRH10036	Soybean	nucleus	43.97	43.34
Solyc03g121740.1.1	Tomato	nucleus	41.09	39.18
GSMUA_Achr6P35800_001	Banana	nucleus	32.47	37.79
HORVU3Hr1G066860.11	Barley	nucleus	28.74	34.01
TraesCS3A01G251200.1	Wheat	nucleus	28.45	33.79
TraesCS3D01G251600.1	Wheat	nucleus	28.45	33.79
Bra039339.1-P	Field mustard	nucleus	28.45	33.67
Os01t0709000-01	Rice	nucleus	29.31	33.22
Bra034738.1-P	Field mustard	nucleus	27.59	32.65
Bra013900.1-P	Field mustard	nucleus	20.11	32.56
EES03504	Sorghum	nucleus	29.02	31.66
TraesCS3B01G280700.1	Wheat	nucleus	25.86	31.47
Bra008875.1-P	Field mustard	nucleus	23.56	29.29
Bra036317.1-P	Field mustard	nucleus	27.87	28.87
Bra020016.1-P	Field mustard	nucleus	27.01	28.31
Bra006166.1-P	Field mustard	nucleus	22.7	28.21
Bra030783.1-P	Field mustard	nucleus	27.87	28.12
Bra036588.1-P	Field mustard	nucleus	26.72	27.76
Bra027771.1-P	Field mustard	nucleus	28.45	27.05
Bra018027.1-P	Field mustard	nucleus	19.54	26.36
Bra031669.1-P	Field mustard	nucleus	24.71	26.3
Bra027668.1-P	Field mustard	nucleus	27.59	26.02
Bra029129.1-P	Field mustard	nucleus	19.83	25.84
Bra029696.1-P	Field mustard	nucleus	24.43	25.53
Bra001284.1-P	Field mustard	nucleus	23.28	23.82
Bra009910.1-P	Field mustard	nucleus	20.98	22.12
Bra020526.1-P	Field mustard	nucleus	25.29	20.0
Bra023380.1-P	Field mustard	nucleus	9.77	16.35
Bra019154.1-P	Field mustard	nucleus	20.4	15.4

Protein Annotations

EnsemblPlants:Bra027389.1	EnsemblPlants:Bra027389.1-P	EnsemblPlantsGene:Bra027389	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF901	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002547EC4	UniProt:M4EF27	MapMan:15.5.2.1	:	:

Description

AT3G13890 (E=9e-130) MYB26 | ATMYB26 (MYB DOMAIN PROTEIN 26); DNA binding / transcription factor

Coordinates

chrA05:+:20665763..20667132

Molecular Weight (calculated)

39180.1 Da

IEP (calculated)

7.279

GRAVY (calculated)

-0.575

Length

348 amino acids

Sequence
(BLAST)

001: MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN TYGHGCLQRC GKSCRLRWIN YLRPDLKRGS FSSQEAALII ELHSLLGNRW AQIAKHLPGR TDNEVKNFWN
101: SSIKKKLMSH HHHGHHYHIS SMASLLTNLP YHNGFNSTNG GDEGSRFMSN IIITNTNPNF ITPSHLSLPS PHVMAPLMFS TSREGDFKFP TTTNTNQSHQ
201: DHNNLYNNLD ILSATPIINS HHHHYDNDSQ LPSLPDLPAS TICTYQETLQ DCDDGNEVFV TPYNSNGDDP RSIPLVATKL LCEQVLEEKI LSSSPITQDH
301: GLLIPTKYNL QMPGDHHNRV VSYINHMIIP SSSSSSPSPI SCGQYVIT

Best Arabidopsis Sequence Match ( AT3G13890.2 )
(BLAST)

001: MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT
101: DNEVKNFWNS SIKKKLMSHH HHGHHHHHLS SMASLLTNLP YHNGFNPTTV DDESSRFMSN IITNTNPNFI TPSHLSLPSP HVMTPLMFPT SREGDFKFLT
201: TNNPNQSHHH DNNHYNNLDI LSPTPTINNH HQPSLSSCPH DNNLQWPALP DFPASTISGF QETLQDYDDA NKLNVFVTPF NDNAKKLLCG EVLEGKVLSS
301: SSPISQDHGL FLPTTYNFQM TSTSDHQHHH RVDSYINHMI IPSSSSSSPI SCGQYVIT

Arabidopsis Description

MYB26Transcription factor MYB26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPG3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.