Factsheet for VIT_09s0002g01670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47101	Soybean	nucleus	57.28	50.28
PGSC0003DMT400087467	Potato	nucleus	44.34	49.82
KRH10036	Soybean	nucleus	56.31	49.29
KRH44125	Soybean	nucleus	55.66	49.28
GSMUA_Achr6P35800_001	Banana	nucleus	43.37	44.82
Solyc03g121740.1.1	Tomato	nucleus	49.19	41.64
CDY55231	Canola	nucleus	44.01	41.46
CDX97526	Canola	nucleus	44.34	40.41
AT3G13890.1	Thale cress	nucleus	47.9	40.33
Bra021515.1-P	Field mustard	nucleus	46.28	40.17
CDY39077	Canola	nucleus	46.28	40.06
CDY37496	Canola	nucleus	45.95	39.78
Bra027389.1-P	Field mustard	nucleus	44.66	39.66
HORVU3Hr1G066860.11	Barley	nucleus	35.6	37.41
TraesCS3A01G251200.1	Wheat	nucleus	34.95	36.86
TraesCS3D01G251600.1	Wheat	nucleus	34.95	36.86
VIT_19s0085g00940.t01	Wine grape	nucleus	39.81	36.5
Os01t0709000-01	Rice	nucleus	35.92	36.16
VIT_05s0020g01100.t01	Wine grape	nucleus	34.63	36.03
EES03504	Sorghum	nucleus	35.92	34.8
TraesCS3B01G280700.1	Wheat	nucleus	31.72	34.27
VIT_01s0010g00410.t01	Wine grape	nucleus	37.54	33.62
VIT_02s0025g00320.t01	Wine grape	nucleus	33.01	33.55
VIT_06s0004g02110.t01	Wine grape	nucleus	30.74	29.23
VIT_17s0000g09080.t01	Wine grape	nucleus	34.3	29.2
VIT_16s0050g00050.t01	Wine grape	nucleus	27.51	28.52
VIT_13s0064g00960.t01	Wine grape	nucleus	24.6	26.3
VIT_14s0060g00240.t01	Wine grape	nucleus	37.22	26.2
VIT_07s0005g02480.t01	Wine grape	nucleus	35.92	24.61

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100246422	wikigene:100246422	MapMan:15.5.2.1	EMBL:AM476581	ProteinID:CAN81631
ProteinID:CAN81631.1	ProteinID:CCB59312	ProteinID:CCB59312.1	UniProt:F6HXY9	EMBL:FN596494	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009739	GO:GO:0009834
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100246422	wikigene:LOC100246422	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF656	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015C886C	ArrayExpress:VIT_09s0002g01670
EnsemblPlantsGene:VIT_09s0002g01670	EnsemblPlants:VIT_09s0002g01670.t01	RefSeq:XP_002274626	RefSeq:XP_002274626.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:1508727..1510213

Molecular Weight (calculated)

34478.9 Da

IEP (calculated)

7.232

GRAVY (calculated)

-0.462

Length

309 amino acids

Sequence
(BLAST)

001: MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS SYGHGCWSSV PRLAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHRILGNRWA QIAKHLPGRT
101: DNEVKNFWNS SIKKKLVSHG VPDLATFPDI PNPNASPEAF FSLNGNPNLI PSPQDHQLYL PSPTSMLQSG FDLANYNLEF VHFQPPPAPP LPDPSSYDPT
201: WPWGCHPHLN QEDYVLGNEV GPIYIETKPI NPNFSLPSFN SPSMAPMMPK LSETISGNDR ILPSSSFPHE VVDPVARLPS LPSGSHPHAP HVPISHFDYI
301: EAIISSLPS

Best Arabidopsis Sequence Match ( AT3G13890.2 )
(BLAST)

001: MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT
101: DNEVKNFWNS SIKKKLMSHH HHGHHHHHLS SMASLLTNLP YHNGFNPTTV DDESSRFMSN IITNTNPNFI TPSHLSLPSP HVMTPLMFPT SREGDFKFLT
201: TNNPNQSHHH DNNHYNNLDI LSPTPTINNH HQPSLSSCPH DNNLQWPALP DFPASTISGF QETLQDYDDA NKLNVFVTPF NDNAKKLLCG EVLEGKVLSS
301: SSPISQDHGL FLPTTYNFQM TSTSDHQHHH RVDSYINHMI IPSSSSSSPI SCGQYVIT

Arabidopsis Description

MYB26Transcription factor MYB26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPG3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.