Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027389.1-P | Field mustard | nucleus | 85.67 | 80.75 |
| CDX97526 | Canola | nucleus | 82.93 | 80.24 |
| CDY39077 | Canola | nucleus | 76.52 | 70.31 |
| CDY37496 | Canola | nucleus | 76.52 | 70.31 |
| AT3G13890.1 | Thale cress | nucleus | 78.66 | 70.3 |
| CDY05516 | Canola | nucleus | 26.83 | 66.67 |
| CDY05331 | Canola | nucleus | 26.83 | 66.67 |
| PGSC0003DMT400087467 | Potato | nucleus | 38.11 | 45.45 |
| VIT_09s0002g01670.t01 | Wine grape | nucleus | 41.46 | 44.01 |
| KRH10036 | Soybean | nucleus | 46.34 | 43.06 |
| KRH47101 | Soybean | nucleus | 44.21 | 41.19 |
| KRH44125 | Soybean | nucleus | 43.6 | 40.97 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 32.93 | 36.12 |
| Solyc03g121740.1.1 | Tomato | nucleus | 39.33 | 35.34 |
| HORVU3Hr1G066860.11 | Barley | nucleus | 31.1 | 34.69 |
| TraesCS3D01G251600.1 | Wheat | nucleus | 30.79 | 34.47 |
| TraesCS3A01G251200.1 | Wheat | nucleus | 30.79 | 34.47 |
| Os01t0709000-01 | Rice | nucleus | 31.71 | 33.88 |
| CDY43404 | Canola | nucleus | 30.18 | 33.67 |
| TraesCS3B01G280700.1 | Wheat | nucleus | 28.96 | 33.22 |
| CDY42172 | Canola | nucleus | 29.57 | 32.99 |
| CDY42171 | Canola | nucleus | 29.57 | 32.99 |
| CDY08409 | Canola | nucleus | 29.57 | 32.99 |
| EES03504 | Sorghum | nucleus | 31.4 | 32.29 |
| CDY50901 | Canola | nucleus | 28.35 | 31.1 |
| CDX93504 | Canola | nucleus | 27.74 | 30.95 |
| CDX91158 | Canola | nucleus | 25.91 | 30.58 |
| CDY53970 | Canola | nucleus | 25.91 | 30.36 |
| CDX85684 | Canola | nucleus | 25.61 | 30.11 |
| CDY22635 | Canola | nucleus | 28.35 | 30.1 |
| CDY06359 | Canola | nucleus | 27.74 | 29.55 |
| CDY68301 | Canola | nucleus | 29.88 | 29.25 |
| CDX78493 | Canola | nucleus | 24.7 | 28.93 |
| CDY58217 | Canola | nucleus | 29.57 | 28.87 |
| CDY07124 | Canola | nucleus | 29.57 | 28.87 |
| CDY50197 | Canola | nucleus | 21.95 | 28.8 |
| CDX87038 | Canola | nucleus | 29.57 | 28.7 |
| CDY32188 | Canola | nucleus | 29.27 | 28.57 |
| CDY31082 | Canola | nucleus | 29.57 | 28.03 |
| CDY32589 | Canola | nucleus | 21.34 | 27.89 |
| CDY38211 | Canola | nucleus | 30.79 | 27.37 |
| CDY08343 | Canola | nucleus | 30.79 | 27.37 |
| CDY64708 | Canola | nucleus | 21.34 | 27.13 |
| CDX92718 | Canola | nucleus | 21.65 | 27.1 |
| CDY25547 | Canola | nucleus | 30.49 | 27.03 |
| CDX88230 | Canola | nucleus | 28.96 | 26.69 |
| CDX80576 | Canola | nucleus | 28.96 | 26.61 |
| CDY38910 | Canola | nucleus | 21.65 | 26.59 |
| CDY05881 | Canola | nucleus | 20.73 | 26.36 |
| CDX89413 | Canola | nucleus | 21.65 | 26.3 |
| CDY27999 | Canola | nucleus | 26.83 | 26.27 |
| CDX94440 | Canola | nucleus | 20.43 | 26.07 |
| CDY35982 | Canola | nucleus | 26.52 | 25.97 |
| CDX74013 | Canola | nucleus | 25.3 | 24.41 |
| CDX97209 | Canola | nucleus | 25.91 | 24.01 |
| CDY70536 | Canola | nucleus | 24.39 | 23.32 |
| CDY34386 | Canola | extracellular | 12.5 | 13.67 |
| CDY70602 | Canola | nucleus, plastid | 3.35 | 7.05 |
| CDY70493 | Canola | cytosol, plastid | 2.13 | 5.3 |
| CDY05517 | Canola | plastid | 1.22 | 2.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078IY02 | UniProt:A0A078IY02 | EnsemblPlants:CDY55231 | ProteinID:CDY55231 |
| ProteinID:CDY55231.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00016578001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF901 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE17F2 | SEG:seg |
Description
BnaCnng28540DBnaCnng28540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IY02]
Coordinates
chrLK033386:+:28728..29948
Molecular Weight (calculated)
37167.7 Da
IEP (calculated)
7.176
GRAVY (calculated)
-0.619
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN IYGHGCWSSV PKHAGIHIYE CGKSCRLRWI NYLRPDLKRG SFSSQEAALI IELHSLLGNR WAQIAKHLPG
101: RTDNEVKNFW NSSIKKKLMS HHHHGHHLHH HFSSMASLLT PYQNGFNANN SDDEGSRFMS NIIITNTYPN FINPSHVSLP SPHVMAPLMF PTSTEGDIKF
201: LTTNQSHQDN KLYNNLDILS STPIINSHHH YDNDSQLPSL PDLPASTICT YQETLQDYDD QGNEVFVTPY NSNDDDPRSI PLVAAKLLCG QVLEDKILSS
301: SPVSQGHGLL IPTKYNLQMP SESNHHPR
101: RTDNEVKNFW NSSIKKKLMS HHHHGHHLHH HFSSMASLLT PYQNGFNANN SDDEGSRFMS NIIITNTYPN FINPSHVSLP SPHVMAPLMF PTSTEGDIKF
201: LTTNQSHQDN KLYNNLDILS STPIINSHHH YDNDSQLPSL PDLPASTICT YQETLQDYDD QGNEVFVTPY NSNDDDPRSI PLVAAKLLCG QVLEDKILSS
301: SPVSQGHGLL IPTKYNLQMP SESNHHPR
001: MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT
101: DNEVKNFWNS SIKKKLMSHH HHGHHHHHLS SMASLLTNLP YHNGFNPTTV DDESSRFMSN IITNTNPNFI TPSHLSLPSP HVMTPLMFPT SREGDFKFLT
201: TNNPNQSHHH DNNHYNNLDI LSPTPTINNH HQPSLSSCPH DNNLQWPALP DFPASTISGF QETLQDYDDA NKLNVFVTPF NDNAKKLLCG EVLEGKVLSS
301: SSPISQDHGL FLPTTYNFQM TSTSDHQHHH RVDSYINHMI IPSSSSSSPI SCGQYVIT
101: DNEVKNFWNS SIKKKLMSHH HHGHHHHHLS SMASLLTNLP YHNGFNPTTV DDESSRFMSN IITNTNPNFI TPSHLSLPSP HVMTPLMFPT SREGDFKFLT
201: TNNPNQSHHH DNNHYNNLDI LSPTPTINNH HQPSLSSCPH DNNLQWPALP DFPASTISGF QETLQDYDDA NKLNVFVTPF NDNAKKLLCG EVLEGKVLSS
301: SSPISQDHGL FLPTTYNFQM TSTSDHQHHH RVDSYINHMI IPSSSSSSPI SCGQYVIT
Arabidopsis Description
MYB26Transcription factor MYB26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPG3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.