Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42172 | Canola | nucleus | 98.64 | 98.64 |
| CDY08409 | Canola | nucleus | 98.64 | 98.64 |
| Bra034738.1-P | Field mustard | nucleus | 98.3 | 98.3 |
| CDY70493 | Canola | cytosol, plastid | 43.54 | 96.97 |
| CDY43404 | Canola | nucleus | 87.76 | 87.76 |
| AT3G12720.1 | Thale cress | nucleus | 87.76 | 84.04 |
| CDY70602 | Canola | nucleus, plastid | 41.84 | 78.85 |
| CDY05331 | Canola | nucleus | 30.95 | 68.94 |
| CDY05516 | Canola | nucleus | 30.95 | 68.94 |
| KRH43663 | Soybean | nucleus | 51.02 | 45.87 |
| VIT_19s0085g00940.t01 | Wine grape | nucleus | 52.38 | 45.7 |
| KRH13791 | Soybean | nucleus | 50.34 | 45.54 |
| PGSC0003DMT400018897 | Potato | nucleus | 44.56 | 40.94 |
| Solyc02g082040.2.1 | Tomato | nucleus | 44.22 | 40.12 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 43.88 | 39.45 |
| Solyc10g005240.2.1 | Tomato | nucleus | 46.26 | 39.42 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 41.84 | 39.05 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 41.16 | 37.93 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 46.26 | 35.6 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 45.58 | 35.36 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 45.92 | 35.34 |
| EER97244 | Sorghum | nucleus | 44.9 | 34.38 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 44.56 | 34.29 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 43.54 | 33.51 |
| CDY50197 | Canola | nucleus | 27.55 | 32.4 |
| CDX93504 | Canola | nucleus | 32.31 | 32.31 |
| CDY32589 | Canola | nucleus | 27.55 | 32.27 |
| Os07t0497500-00 | Rice | nucleus | 43.88 | 32.25 |
| CDX85684 | Canola | nucleus | 30.27 | 31.9 |
| CDY50901 | Canola | nucleus | 32.31 | 31.77 |
| CDY22635 | Canola | nucleus | 33.33 | 31.72 |
| CDY06359 | Canola | nucleus | 32.99 | 31.49 |
| CDY38910 | Canola | nucleus | 28.57 | 31.46 |
| CDX91158 | Canola | nucleus | 29.59 | 31.3 |
| CDY53970 | Canola | nucleus | 29.59 | 31.07 |
| Zm00001d021537_P001 | Maize | nucleus | 31.97 | 31.02 |
| CDX92718 | Canola | nucleus | 27.55 | 30.92 |
| CDX78493 | Canola | nucleus | 28.91 | 30.36 |
| CDX94440 | Canola | nucleus | 26.53 | 30.35 |
| CDY37496 | Canola | nucleus | 36.05 | 29.69 |
| CDX89413 | Canola | nucleus | 27.21 | 29.63 |
| CDY55231 | Canola | nucleus | 32.99 | 29.57 |
| CDY39077 | Canola | nucleus | 35.37 | 29.13 |
| CDY58217 | Canola | nucleus | 32.99 | 28.87 |
| CDY07124 | Canola | nucleus | 32.99 | 28.87 |
| CDY05881 | Canola | nucleus | 25.17 | 28.68 |
| CDY32188 | Canola | nucleus | 32.65 | 28.57 |
| CDX88230 | Canola | nucleus | 34.35 | 28.37 |
| CDX97526 | Canola | nucleus | 32.65 | 28.32 |
| CDX80576 | Canola | nucleus | 34.35 | 28.29 |
| CDX87038 | Canola | nucleus | 32.31 | 28.11 |
| CDY68301 | Canola | nucleus | 31.97 | 28.06 |
| CDY31082 | Canola | nucleus | 32.99 | 28.03 |
| CDY64708 | Canola | nucleus | 24.49 | 27.91 |
| CDY38211 | Canola | nucleus | 32.65 | 26.02 |
| CDY08343 | Canola | nucleus | 32.65 | 26.02 |
| CDY27999 | Canola | nucleus | 29.59 | 25.97 |
| CDY35982 | Canola | nucleus | 29.25 | 25.67 |
| CDY25547 | Canola | nucleus | 31.97 | 25.41 |
| CDX97209 | Canola | nucleus | 29.93 | 24.86 |
| CDX74013 | Canola | nucleus | 28.23 | 24.41 |
| CDY70536 | Canola | nucleus | 27.89 | 23.91 |
| CDY34386 | Canola | extracellular | 11.56 | 11.33 |
| CDY05517 | Canola | plastid | 1.36 | 2.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078HWQ4 | UniProt:A0A078HWQ4 | EnsemblPlants:CDY42171 | ProteinID:CDY42171 |
| ProteinID:CDY42171.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00074362001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF702 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF0215 | SEG:seg |
Description
BnaC05g40480DBnaC05g40480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWQ4]
Coordinates
chrLK032516:-:250306..251386
Molecular Weight (calculated)
33193.3 Da
IEP (calculated)
8.492
GRAVY (calculated)
-0.702
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEKWEMKRD EMGHRCCGKH KVKRGLWSPE EDAKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGSF TAEEEQTIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSASSSS NNTPKPSKTK SIMTNPTFDQ STTAFSITNV NPYTSNKPNK VKSPNQTTIP
201: SQTVIPIDHT MSSLLNDENM IPNWSNVDGM APIHEQAPMF SSEKAVIGVE DDDLNMDILF NTPSSSTFDP DFGSMFSSAM SMDFNPMDDL GWTF
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSASSSS NNTPKPSKTK SIMTNPTFDQ STTAFSITNV NPYTSNKPNK VKSPNQTTIP
201: SQTVIPIDHT MSSLLNDENM IPNWSNVDGM APIHEQAPMF SSEKAVIGVE DDDLNMDILF NTPSSSTFDP DFGSMFSSAM SMDFNPMDDL GWTF
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Arabidopsis Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.