Factsheet for Solyc02g082040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g120440.1.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc10g081530.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12720.1	Solyc03g120440.1.1	AT1G15570.1	21798944
AT3G12720.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT3G12720.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT3G12720.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT3G12720.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT3G12720.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT3G12720.1	Solyc10g081530.1.1	AT3G28715.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018897	Potato	nucleus	92.59	93.75
Solyc01g009650.1.1	Tomato	nucleus	16.98	60.44
KRH13791	Soybean	nucleus	46.3	46.15
Solyc10g005240.2.1	Tomato	nucleus	48.46	45.51
KRH43663	Soybean	nucleus	45.68	45.26
Bra039339.1-P	Field mustard	nucleus	40.43	44.56
CDY08409	Canola	nucleus	40.43	44.56
CDY42172	Canola	nucleus	40.43	44.56
CDY43404	Canola	nucleus	40.43	44.56
GSMUA_Achr9P11190_001	Banana	nucleus	44.75	44.34
Bra034738.1-P	Field mustard	nucleus	40.12	44.22
CDY42171	Canola	nucleus	40.12	44.22
VIT_01s0010g00410.t01	Wine grape	nucleus	46.6	43.77
AT3G12720.1	Thale cress	nucleus	40.12	42.35
GSMUA_Achr8P03510_001	Banana	nucleus	41.05	41.69
GSMUA_Achr9P25110_001	Banana	nucleus	40.43	41.59
HORVU2Hr1G051030.3	Barley	nucleus	45.99	39.01
TraesCS2A01G230400.1	Wheat	nucleus	45.37	38.79
TraesCS2D01G234000.1	Wheat	nucleus	45.68	38.74
TraesCS2B01G252000.1	Wheat	nucleus	45.06	38.22
HORVU2Hr1G051010.1	Barley	nucleus, plasma membrane	45.06	38.22
EER97244	Sorghum	nucleus	43.83	36.98
Os07t0497500-00	Rice	nucleus	44.75	36.25
Solyc03g121740.1.1	Tomato	nucleus	37.35	33.15
Zm00001d021537_P001	Maize	nucleus	30.86	33.0
Solyc06g071690.2.1	Tomato	nucleus	31.17	31.46
Solyc03g025870.2.1	Tomato	nucleus	26.54	30.82
Solyc03g112390.2.1	Tomato	nucleus	30.86	30.77
Solyc08g081500.1.1	Tomato	nucleus	29.63	29.0
Solyc10g044680.1.1	Tomato	nucleus	34.26	27.89
Solyc01g102340.2.1	Tomato	nucleus	35.19	26.76
Solyc11g065840.1.1	Tomato	nucleus	27.78	25.5
Solyc01g087130.2.1	Tomato	nucleus	25.93	23.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4BA74	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF702
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc02g082040.2	EnsemblPlants:Solyc02g082040.2.1	UniParc:UPI0002767B42
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:45782116..45783421

Molecular Weight (calculated)

37150.9 Da

IEP (calculated)

7.901

GRAVY (calculated)

-0.650

Length

324 amino acids

Sequence
(BLAST)

001: MGHHCCSKQK VKRGLWSPEE DEKLIKHIKT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL RPDLKRGCFS EQEERIIIDV HRILGNRWAQ IAKHLPGRTD
101: NEVKNFWNSC IKKKLISQGF DPNTHNLLST KKKANKNNYT KSSIFTIETS LSSSSTKELV SMDMIKASLA ALSTFPNYAN NMSMPQYQTS LSRLYGSVCV
201: PTTTNIIGNS NYASTIDYKK QSTVINEKCM WSFTGFETPQ HEFGNGHEEM KQEAQVQVED KSCQEEVLYK VNDLHEFNHD GRRIAENVTF DEGSDFDFEF
301: MNSELVPRGI FTNIDSIDQL AWDC

Best Arabidopsis Sequence Match ( AT3G12720.1 )
(BLAST)

001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF

Arabidopsis Description

ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.