Factsheet for Solyc01g087130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017709	Potato	nucleus	94.6	93.8
Zm00001d023931_P001	Maize	nucleus	21.02	76.29
Solyc01g009650.1.1	Tomato	nucleus	14.2	54.95
VIT_13s0064g00960.t01	Wine grape	nucleus	44.6	54.33
GSMUA_Achr8P31350_001	Banana	nucleus	41.19	51.97
GSMUA_Achr2P07780_001	Banana	nucleus	40.91	48.48
GSMUA_AchrUn_...	Banana	nucleus	37.5	46.64
Solyc11g065840.1.1	Tomato	nucleus	46.02	45.89
TraesCS5A01G101000.1	Wheat	nucleus	40.91	37.02
TraesCS5D01G113300.1	Wheat	nucleus	40.91	37.02
TraesCS5B01G105900.1	Wheat	nucleus	39.77	35.9
EES17106	Sorghum	nucleus	41.48	34.93
HORVU5Hr1G027750.1	Barley	nucleus	40.34	30.6
Solyc06g071690.2.1	Tomato	nucleus	26.99	29.59
Solyc03g025870.2.1	Tomato	nucleus	22.73	28.67
Solyc03g112390.2.1	Tomato	nucleus	26.14	28.31
Solyc08g081500.1.1	Tomato	nucleus	26.14	27.79
Solyc02g082040.2.1	Tomato	nucleus	23.86	25.93
Solyc10g005240.2.1	Tomato	nucleus	24.72	25.22
Solyc01g102340.2.1	Tomato	nucleus	30.4	25.12
Solyc03g121740.1.1	Tomato	nucleus	25.57	24.66
Solyc10g044680.1.1	Tomato	nucleus	27.56	24.37

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4AYA4	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF915
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc01g087130.2	EnsemblPlants:Solyc01g087130.2.1	UniParc:UPI0002762F94
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:82054909..82057227

Molecular Weight (calculated)

39183.8 Da

IEP (calculated)

6.182

GRAVY (calculated)

-0.682

Length

352 amino acids

Sequence
(BLAST)

001: MRKPEHNNTT MKEKEKEKVN KLGKLRKGLW SPEEDEKLMS YMLRNGQGCW SDIARNAGLQ RCGKSCRLRW INYLRPDLKR GAFSLQEEEL IVHLHSILGN
101: RWSQIAARLP GRTDNEIKNF WNSTIKKRSK NNNNSTPSPN TSDSSIGGIF PMQGHDVNNV MATLCMDNSS STTSGSSMQA MVPFNPFPQL DSTSYDISGL
201: VGPVNLGQFG CSGGDGGFLD YGVVETYSMM GLGSDEFSIP SLEGVHNKST TTMGESNNNS NVDFSSNNIV SGANDYDSMI EKKNNTNVNN NNNQHLMNMS
301: GISDQSLKVE DYMVGFGNHH HWHGESLRIG EFDWEGLLAN VSSLPYLDFQ VE

Best Arabidopsis Sequence Match ( AT3G08500.1 )
(BLAST)

001: MMMRKPDITT IRDKGKPNHA CGGNNNKPKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIFHLH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD

Arabidopsis Description

MYB83Transcription factor MYB83 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.