Factsheet for Solyc03g025870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g005950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25560.1	Solyc12g005950.1.1	AT2G32950.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037080	Potato	nucleus	93.19	93.53
Solyc01g009650.1.1	Tomato	nucleus	24.01	73.63
GSMUA_Achr4P25340_001	Banana	nucleus	30.82	60.56
KRH35334	Soybean	nucleus	47.67	49.26
VIT_16s0050g00050.t01	Wine grape	nucleus	50.54	47.32
KRH38485	Soybean	nucleus	46.24	44.33
KRH09018	Soybean	nucleus	45.88	43.99
Bra013900.1-P	Field mustard	nucleus	32.97	42.79
KRG91494	Soybean	nucleus	48.03	40.24
CDY32589	Canola	nucleus	35.48	39.44
AT5G52260.1	Thale cress	nucleus	37.63	39.18
GSMUA_Achr4P29410_001	Banana	nucleus	39.07	39.07
CDY38910	Canola	nucleus	37.28	38.95
Bra029129.1-P	Field mustard	nucleus	37.28	38.95
GSMUA_Achr4P11960_001	Banana	nucleus	34.05	38.62
TraesCS2D01G366800.1	Wheat	nucleus	37.63	38.04
CDY64708	Canola	nucleus	35.13	37.98
Bra018027.1-P	Field mustard	nucleus	35.13	37.98
TraesCS2B01G387300.1	Wheat	nucleus	37.28	37.96
TraesCS2A01G370300.1	Wheat	nucleus	37.63	37.91
CDY05881	Canola	nucleus	34.41	37.21
CDY50197	Canola	nucleus	33.33	37.2
AT3G48920.1	Thale cress	nucleus	34.77	37.16
TraesCS2B01G387700.1	Wheat	nucleus	36.2	36.86
CDX94440	Canola	nucleus	33.69	36.58
TraesCS2A01G370700.1	Wheat	nucleus	36.2	36.46
Zm00001d051267_P001	Maize	nucleus	36.2	36.33
TraesCS2D01G367000.1	Wheat	nucleus	36.56	36.3
Os04t0532800-01	Rice	nucleus	35.48	36.26
CDX92718	Canola	nucleus	34.05	36.26
TraesCS2B01G387800.1	Wheat	nucleus	36.2	36.2
TraesCS2D01G366900.1	Wheat	nucleus	36.56	36.04
TraesCS2B01G387500.1	Wheat	nucleus	36.56	36.04
TraesCS2A01G370400.1	Wheat	nucleus	36.56	36.04
CDX89413	Canola	nucleus	34.77	35.93
TraesCS6A01G236700.1	Wheat	nucleus	36.92	35.89
Zm00001d017383_P001	Maize	nucleus	36.92	35.4
GSMUA_Achr2P11450_001	Banana	nucleus	39.07	35.39
TraesCS6D01G219300.1	Wheat	nucleus	37.28	35.25
TraesCS6B01G265200.1	Wheat	nucleus	37.28	35.25
GSMUA_Achr1P17480_001	Banana	nucleus	34.41	35.16
AT4G25560.1	Thale cress	nucleus	35.48	34.98
HORVU6Hr1G060600.2	Barley	mitochondrion	27.96	34.98
GSMUA_Achr4P05410_001	Banana	nucleus	36.2	34.83
GSMUA_Achr8P11340_001	Banana	nucleus	34.05	34.17
EES06150	Sorghum	nucleus	36.2	33.78
HORVU6Hr1G060610.3	Barley	nucleus	37.28	33.77
EES11177	Sorghum	nucleus	35.84	33.56
EES07547	Sorghum	nucleus	36.56	33.44
HORVU2Hr1G091590.1	Barley	nucleus	36.2	33.22
Zm00001d014989_P001	Maize	nucleus	36.56	33.12
TraesCS6B01G053100.1	Wheat	nucleus	36.2	32.79
TraesCS6D01G043600.1	Wheat	nucleus	36.92	32.59
HORVU6Hr1G007010.2	Barley	nucleus	36.56	32.59
TraesCS6A01G037700.1	Wheat	nucleus	36.56	28.73
Solyc02g082040.2.1	Tomato	nucleus	30.82	26.54
Solyc06g071690.2.1	Tomato	nucleus	29.39	25.55
Solyc03g112390.2.1	Tomato	nucleus	29.39	25.23
Solyc10g005240.2.1	Tomato	nucleus	29.39	23.77
Solyc08g081500.1.1	Tomato	nucleus	27.96	23.57
Solyc11g065840.1.1	Tomato	nucleus	29.03	22.95
Solyc01g087130.2.1	Tomato	nucleus	28.67	22.73
Solyc03g121740.1.1	Tomato	nucleus	28.67	21.92
Solyc01g102340.2.1	Tomato	nucleus	32.62	21.36
Bra019154.1-P	Field mustard	nucleus	34.41	20.82
Solyc10g044680.1.1	Tomato	nucleus	29.39	20.6

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ncoils:Coil	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:K4BF60	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF563	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc03g025870.2	EnsemblPlants:Solyc03g025870.2.1
UniParc:UPI0002768E99	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:3256762..3259518

Molecular Weight (calculated)

31878.4 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.832

Length

279 amino acids

Sequence
(BLAST)

001: MGCKLAAEKP KQKHKKGLWS PDEDDRLKNY MIKHGHGCWS SVPINAGLQR NGKSCRLRWI NYLRPGLKRG AFSLEEEDII LTLHAMFGNK WSQIAQQLPG
101: RTDNEIKNHW HSYLKKRVSK MGENEGHTKP GKTDSSSPSL KKLTPQNSSL DSFEHIEGSL ADSDQSVYPR ETQKSNLPKV LFAEWLSLDQ FNGQDFQNSG
201: SFSFEPCKSN FVYNNNAELH DILMHSLPMN NDDGNGVNQE VLHNDIFPPQ LKFEDTLSGN GFEEFMSREF NINDDVMYI

Best Arabidopsis Sequence Match ( AT5G52260.1 )
(BLAST)

001: MTKSGERPKQ RQRKGLWSPE EDQKLKSFIL SRGHACWTTV PILAGLQRNG KSCRLRWINY LRPGLKRGSF SEEEEETILT LHSSLGNKWS RIAKYLPGRT
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV

Arabidopsis Description

AtMYB19MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.