Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G053100.1 | Wheat | nucleus | 93.61 | 95.13 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 92.01 | 91.14 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 89.78 | 79.15 |
| EES06150 | Sorghum | nucleus | 70.29 | 73.58 |
| Zm00001d014989_P001 | Maize | nucleus | 68.05 | 69.16 |
| Solyc01g009650.1.1 | Tomato | nucleus | 18.85 | 64.84 |
| Bra013900.1-P | Field mustard | nucleus | 29.39 | 42.79 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 40.58 | 41.23 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 34.82 | 39.93 |
| KRH35334 | Soybean | nucleus | 33.87 | 39.26 |
| PGSC0003DMT400037080 | Potato | nucleus | 34.19 | 38.49 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 26.84 | 37.67 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 34.82 | 36.58 |
| Solyc03g025870.2.1 | Tomato | nucleus | 32.59 | 36.56 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 35.46 | 36.51 |
| CDY38910 | Canola | nucleus | 30.35 | 35.58 |
| Bra029129.1-P | Field mustard | nucleus | 30.35 | 35.58 |
| CDY32589 | Canola | nucleus | 28.43 | 35.46 |
| KRH38485 | Soybean | nucleus | 32.91 | 35.4 |
| KRH09018 | Soybean | nucleus | 32.91 | 35.4 |
| CDX89413 | Canola | nucleus | 30.03 | 34.81 |
| CDY50197 | Canola | nucleus | 27.8 | 34.8 |
| AT5G52260.1 | Thale cress | nucleus | 29.39 | 34.33 |
| CDX94440 | Canola | nucleus | 28.11 | 34.24 |
| AT3G48920.1 | Thale cress | nucleus | 28.11 | 33.72 |
| CDY05881 | Canola | nucleus | 27.48 | 33.33 |
| CDY64708 | Canola | nucleus | 27.16 | 32.95 |
| Bra018027.1-P | Field mustard | nucleus | 27.16 | 32.95 |
| CDX92718 | Canola | nucleus | 27.16 | 32.44 |
| AT4G25560.1 | Thale cress | nucleus | 29.07 | 32.16 |
| KRG91494 | Soybean | nucleus | 32.91 | 30.93 |
| HORVU3Hr1G066860.11 | Barley | nucleus | 27.16 | 28.91 |
| HORVU3Hr1G047290.2 | Barley | nucleus | 26.84 | 27.72 |
| HORVU3Hr1G016940.1 | Barley | nucleus | 23.64 | 25.87 |
| HORVU7Hr1G072450.2 | Barley | nucleus | 26.84 | 24.63 |
| HORVU7Hr1G082020.1 | Barley | nucleus | 27.16 | 24.29 |
| HORVU1Hr1G079040.4 | Barley | nucleus, plastid | 26.84 | 23.86 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 29.07 | 23.82 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 28.11 | 23.04 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 30.99 | 22.61 |
| Bra019154.1-P | Field mustard | nucleus | 28.75 | 19.52 |
| HORVU5Hr1G027750.1 | Barley | nucleus | 26.2 | 17.67 |
| HORVU1Hr1G079030.2 | Barley | nucleus | 22.04 | 14.56 |
Protein Annotations
| EMBL:AK368664 | EnsemblPlants:HORVU6Hr1G007010.2 | EnsemblPlantsGene:HORVU6Hr1G007010 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF925 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI00020079F1 | UniProt:F2DXP6 | MapMan:15.5.2.1 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DXP6]
Coordinates
chrchr6H:+:14495956..14498234
Molecular Weight (calculated)
33806.3 Da
IEP (calculated)
7.559
GRAVY (calculated)
-0.585
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCRSCDKPK MNYRKGLWSP EEDQRLRDYI LKHGLGCWSA VPAKAGLQRN GKSCRLRWIN YLRPGLKRGM FSQEEEDVVI NLQAKLGNKW SQIAMHLPGR
101: TDNEVKNYWN SYLKKRVMQL GSNSSSNPAS KNSASPELLT SMSANTELIM TSGGGGGSTA TSTHDHDANI GSSGAVSAAE PFVDHQHHQH QDAKNYVFAD
201: WMPTAAAVTA APGPESYSMS AHWPASTASS GNVTPSHGAF VGDQMSATSY GALQHTHQHH QQQEHQHHHQ SAVTAVGAHG GAAGMVAGGG YFDLLNMGDI
301: YGGFTTANDD LLF
101: TDNEVKNYWN SYLKKRVMQL GSNSSSNPAS KNSASPELLT SMSANTELIM TSGGGGGSTA TSTHDHDANI GSSGAVSAAE PFVDHQHHQH QDAKNYVFAD
201: WMPTAAAVTA APGPESYSMS AHWPASTASS GNVTPSHGAF VGDQMSATSY GALQHTHQHH QQQEHQHHHQ SAVTAVGAHG GAAGMVAGGG YFDLLNMGDI
301: YGGFTTANDD LLF
001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
Arabidopsis Description
AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.