Factsheet for HORVU1Hr1G017970.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G050990.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26660.1	HORVU3Hr1G050990.2	AT3G28715.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G084400.1	Wheat	nucleus	98.83	98.83
TraesCS1A01G083100.2	Wheat	nucleus	98.6	98.37
TraesCS1B01G100600.1	Wheat	nucleus	98.6	98.14
Os05t0140100-01	Rice	nucleus	92.31	92.74
OQU77376	Sorghum	nucleus	89.28	89.07
Zm00001d010907_P001	Maize	nucleus	87.88	88.5
CDY05331	Canola	nucleus	26.57	86.36
CDY05516	Canola	nucleus	26.34	85.61
Zm00001d024784_P001	Maize	nucleus	46.15	77.34
GSMUA_Achr11P...	Banana	nucleus	31.7	58.37
GSMUA_AchrUn_...	Banana	nucleus	35.2	54.91
CDX93504	Canola	nucleus	36.13	52.72
GSMUA_Achr2P01830_001	Banana	nucleus	37.3	52.12
GSMUA_Achr4P19560_001	Banana	nucleus	34.03	51.59
CDY50901	Canola	nucleus	35.9	51.51
CDY22635	Canola	nucleus	36.83	51.13
Bra030783.1-P	Field mustard	nucleus	40.79	50.72
CDY06359	Canola	nucleus	36.36	50.65
CDY31082	Canola	nucleus	40.79	50.58
CDY32188	Canola	nucleus	39.39	50.3
AT1G57560.1	Thale cress	nucleus	36.6	50.0
GSMUA_Achr2P18440_001	Banana	nucleus	42.42	49.86
Bra031669.1-P	Field mustard	nucleus	37.76	49.54
GSMUA_Achr3P12200_001	Banana	nucleus	41.26	49.17
GSMUA_Achr3P24580_001	Banana	nucleus	39.16	48.84
Bra020016.1-P	Field mustard	nucleus	37.76	48.8
GSMUA_Achr7P17250_001	Banana	nucleus	38.93	48.69
CDY68301	Canola	nucleus	37.53	48.06
Bra036588.1-P	Field mustard	nucleus	37.53	48.06
CDX87038	Canola	nucleus	37.3	47.34
GSMUA_Achr1P18990_001	Banana	nucleus	36.6	47.01
AT1G09540.1	Thale cress	nucleus	39.63	46.45
GSMUA_Achr5P18400_001	Banana	nucleus	40.56	46.4
GSMUA_Achr8P18730_001	Banana	nucleus	39.86	46.22
AT5G26660.1	Thale cress	nucleus	37.53	45.74
GSMUA_Achr1P25120_001	Banana	nucleus	38.23	45.56
VIT_14s0060g00240.t01	Wine grape	nucleus	45.92	44.87
GSMUA_Achr2P07930_001	Banana	nucleus	39.63	44.62
KRG90431	Soybean	nucleus	44.29	44.39
GSMUA_Achr11P...	Banana	nucleus	38.69	44.27
CDX80576	Canola	nucleus	36.83	44.26
CDX88230	Canola	nucleus	36.6	44.1
KRH33726	Soybean	nucleus	43.12	43.12
KRH68389	Soybean	nucleus	41.72	42.82
HORVU3Hr1G066860.11	Barley	nucleus	29.14	42.52
KRG96660	Soybean	nucleus	42.42	41.94
PGSC0003DMT400040774	Potato	nucleus	39.39	41.52
PGSC0003DMT400047076	Potato	nucleus	40.79	41.08
Solyc01g102340.2.1	Tomato	nucleus	40.56	40.85
Solyc10g044680.1.1	Tomato	nucleus	37.76	40.7
Bra009910.1-P	Field mustard	nucleus	30.3	39.39
HORVU3Hr1G047290.2	Barley	nucleus	26.81	37.95
HORVU7Hr1G082020.1	Barley	nucleus	29.37	36.0
HORVU1Hr1G079040.4	Barley	nucleus, plastid	28.44	34.66
Bra020526.1-P	Field mustard	nucleus	34.97	34.09
HORVU2Hr1G091590.1	Barley	nucleus	22.84	32.24
HORVU6Hr1G007010.2	Barley	nucleus	22.61	30.99
HORVU6Hr1G060610.3	Barley	nucleus	21.91	30.52
HORVU7Hr1G072450.2	Barley	nucleus	24.24	30.5
HORVU6Hr1G060600.2	Barley	mitochondrion	15.85	30.49
HORVU3Hr1G016940.1	Barley	nucleus	18.65	27.97
HORVU2Hr1G051030.3	Barley	nucleus	24.71	27.75
HORVU2Hr1G051010.1	Barley	nucleus, plasma membrane	24.01	26.96
HORVU5Hr1G027750.1	Barley	nucleus	24.24	22.41
HORVU1Hr1G079030.2	Barley	nucleus	20.28	18.35
CDY05517	Canola	plastid	6.99	17.54

Protein Annotations

EnsemblPlants:HORVU1Hr1G017970.4	EnsemblPlantsGene:HORVU1Hr1G017970	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF465	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI00029525EE	UniProt:M0XFV8	MapMan:15.5.2.1	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:63228086..63231080

Molecular Weight (calculated)

47342.4 Da

IEP (calculated)

6.642

GRAVY (calculated)

-0.656

Length

429 amino acids

Sequence
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF AQDEEDLIVE LHAVLGNRWS QIAAQMPGRT
101: DNEIKNLWNS SLKKKLRQKG IDPNTHKPLT EADRSGAAPT ISNERTSGSS DVNPSSTGAL GNFGHLLSET AQSSMLLPVY DKKRPETPSL ARPKVPAKEL
201: FLEQLTAGHE SPSSCRSSGP TLYFPFQQQL GYSNECGSGD GANMNSLWFN QNDFNCSTIS TVMPTVSPSA LSTPMGLNLP PDNHRHGGTG IGSAPFYWDG
301: VNPSSSGSTG SSGSNSMGFE PQSTNSILEN SVFPWTDIGV GQEKDTRVQL VEELKWPDLL HGTFAEATTA MQNQSQSLYD DVIKAESQFN MEGICASWFQ
401: NQQPQQQLQA ASDMYDKDLQ RMPLSFEHI

Best Arabidopsis Sequence Match ( AT1G09540.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL

Arabidopsis Description

MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.