Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY46357 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | CDY46357 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88230 | Canola | nucleus | 98.32 | 98.6 |
| Bra009910.1-P | Field mustard | nucleus | 89.36 | 96.67 |
| CDY05331 | Canola | nucleus | 35.57 | 96.21 |
| CDY05516 | Canola | nucleus | 35.29 | 95.45 |
| Zm00001d008206_P001 | Maize | nucleus | 18.49 | 90.41 |
| AT5G26660.1 | Thale cress | nucleus | 84.87 | 86.08 |
| CDX87038 | Canola | nucleus | 80.39 | 84.91 |
| CDY68301 | Canola | nucleus | 78.99 | 84.18 |
| CDY05517 | Canola | plastid | 35.29 | 73.68 |
| GSMUA_Achr11P... | Banana | nucleus | 29.69 | 45.49 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.01 | 45.45 |
| CDX93504 | Canola | nucleus | 36.13 | 43.88 |
| CDY50901 | Canola | nucleus | 36.13 | 43.14 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 33.89 | 42.76 |
| CDY06359 | Canola | nucleus | 36.13 | 41.88 |
| CDY22635 | Canola | nucleus | 36.13 | 41.75 |
| Zm00001d024784_P001 | Maize | nucleus | 29.69 | 41.41 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 35.01 | 40.72 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 37.82 | 39.36 |
| CDY32188 | Canola | nucleus | 36.97 | 39.29 |
| CDY31082 | Canola | nucleus | 37.82 | 39.02 |
| Os01t0285300-01 | Rice | nucleus | 45.66 | 38.08 |
| Zm00001d010907_P001 | Maize | nucleus | 45.38 | 38.03 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 35.29 | 37.72 |
| Os05t0140100-01 | Rice | nucleus | 45.1 | 37.7 |
| OQU77376 | Sorghum | nucleus | 45.1 | 37.44 |
| Zm00001d040527_P001 | Maize | nucleus | 29.41 | 37.37 |
| EES02806 | Sorghum | nucleus | 44.54 | 37.24 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 35.85 | 37.21 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 37.25 | 36.94 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 44.26 | 36.83 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 43.98 | 36.43 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 36.69 | 36.39 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 43.7 | 36.36 |
| CDY07124 | Canola | nucleus | 34.17 | 36.31 |
| CDY58217 | Canola | nucleus | 34.17 | 36.31 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 43.7 | 36.28 |
| KRH68389 | Soybean | nucleus | 41.46 | 35.41 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 36.13 | 35.34 |
| KRH33726 | Soybean | nucleus | 42.02 | 34.97 |
| KRG90431 | Soybean | nucleus | 41.74 | 34.81 |
| KRG96660 | Soybean | nucleus | 42.3 | 34.79 |
| CDY42172 | Canola | nucleus | 28.29 | 34.35 |
| CDY42171 | Canola | nucleus | 28.29 | 34.35 |
| CDY08409 | Canola | nucleus | 28.29 | 34.35 |
| CDY43404 | Canola | nucleus | 27.73 | 33.67 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 35.29 | 33.6 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 35.85 | 33.6 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 34.73 | 33.51 |
| CDY53970 | Canola | nucleus | 25.77 | 32.86 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 40.34 | 32.8 |
| GSMUA_Achr11P... | Banana | nucleus | 34.45 | 32.8 |
| CDX91158 | Canola | nucleus | 25.49 | 32.73 |
| PGSC0003DMT400040774 | Potato | nucleus | 37.25 | 32.68 |
| CDY32589 | Canola | nucleus | 22.97 | 32.67 |
| CDX85684 | Canola | nucleus | 25.49 | 32.62 |
| Solyc10g044680.1.1 | Tomato | nucleus | 36.13 | 32.41 |
| CDX78493 | Canola | nucleus | 25.21 | 32.14 |
| CDY50197 | Canola | nucleus | 22.41 | 32.0 |
| CDX94440 | Canola | nucleus | 22.69 | 31.52 |
| Solyc01g102340.2.1 | Tomato | nucleus | 37.25 | 31.22 |
| CDY38910 | Canola | nucleus | 23.25 | 31.09 |
| PGSC0003DMT400047076 | Potato | nucleus | 36.69 | 30.75 |
| CDX89413 | Canola | nucleus | 22.97 | 30.37 |
| CDY64708 | Canola | nucleus | 21.85 | 30.23 |
| CDX92718 | Canola | nucleus | 21.85 | 29.77 |
| CDY05881 | Canola | nucleus | 21.29 | 29.46 |
| CDY55231 | Canola | nucleus | 26.61 | 28.96 |
| CDY27999 | Canola | nucleus | 26.89 | 28.66 |
| CDY35982 | Canola | nucleus | 26.61 | 28.36 |
| CDY39077 | Canola | nucleus | 27.73 | 27.73 |
| CDY37496 | Canola | nucleus | 27.73 | 27.73 |
| CDX74013 | Canola | nucleus | 25.77 | 27.06 |
| CDX97526 | Canola | nucleus | 25.21 | 26.55 |
| CDY70536 | Canola | nucleus | 25.49 | 26.53 |
| CDY08343 | Canola | nucleus | 26.89 | 26.02 |
| CDY38211 | Canola | nucleus | 26.89 | 26.02 |
| CDY25547 | Canola | nucleus | 26.89 | 25.95 |
| CDX97209 | Canola | nucleus | 25.49 | 25.71 |
| CDY34386 | Canola | extracellular | 10.36 | 12.33 |
| CDY70493 | Canola | cytosol, plastid | 1.68 | 4.55 |
| CDY70602 | Canola | nucleus, plastid | 1.4 | 3.21 |
Protein Annotations
| EnsemblPlants:CDX80576 | EnsemblPlantsGene:GSBRNA2T00133700001 | Gene3D:1.10.10.60 | GO:A0A078CTV0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF474 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX80576 | ProteinID:CDX80576.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDB5BD | MapMan:15.5.2.1 | : |
Description
BnaC07g28680D
Coordinates
chrLK031821:-:1412605..1414206
Molecular Weight (calculated)
40498.4 Da
IEP (calculated)
8.021
GRAVY (calculated)
-0.674
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQEEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPII SELQTQNVID QKLTSLNTSE VVKSTASINN PHDQSMVVLS QPSPWWYPAT ATTTTANQNA EFCFSSSTTQ
201: TVSDQIVSLI SSMSTSSSPT PMTSNFNPIP NNWELSYCNN TVPSQSNSIY SAFFGNHYTE ATQIMNTNNN NILLDQQPHQ DMKSWAPEIL HYTEHNQSSE
301: TGFEAEVKPD IAKYYWRSIS SSPSPNESAA TLLHDADVEF YGKNLQKPNI MAFDQRL
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPII SELQTQNVID QKLTSLNTSE VVKSTASINN PHDQSMVVLS QPSPWWYPAT ATTTTANQNA EFCFSSSTTQ
201: TVSDQIVSLI SSMSTSSSPT PMTSNFNPIP NNWELSYCNN TVPSQSNSIY SAFFGNHYTE ATQIMNTNNN NILLDQQPHQ DMKSWAPEIL HYTEHNQSSE
301: TGFEAEVKPD IAKYYWRSIS SSPSPNESAA TLLHDADVEF YGKNLQKPNI MAFDQRL
001: MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL
Arabidopsis Description
MYB86Transcription factor MYB86 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPH6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.