Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029696.1-P | Field mustard | nucleus | 99.4 | 100.0 |
| CDY27999 | Canola | nucleus | 96.72 | 96.72 |
| CDX74013 | Canola | nucleus | 86.57 | 85.29 |
| CDY70536 | Canola | nucleus | 86.57 | 84.55 |
| AT3G08500.1 | Thale cress | nucleus | 85.07 | 83.09 |
| CDY05516 | Canola | nucleus | 26.27 | 66.67 |
| CDY05331 | Canola | nucleus | 25.97 | 65.91 |
| KRH20828 | Soybean | nucleus | 48.06 | 51.77 |
| KRH27485 | Soybean | nucleus | 48.66 | 51.75 |
| KRG93751 | Soybean | nucleus | 48.96 | 48.81 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 40.3 | 48.39 |
| KRH18309 | Soybean | nucleus | 48.36 | 47.51 |
| VIT_13s0064g00960.t01 | Wine grape | nucleus | 40.3 | 46.71 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 40.0 | 45.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.91 | 44.88 |
| PGSC0003DMT400018995 | Potato | nucleus | 45.97 | 43.87 |
| Solyc11g065840.1.1 | Tomato | nucleus | 45.97 | 43.63 |
| CDX91158 | Canola | nucleus | 36.12 | 43.53 |
| CDX85684 | Canola | nucleus | 36.12 | 43.37 |
| CDY53970 | Canola | nucleus | 36.12 | 43.21 |
| CDX78493 | Canola | nucleus | 34.93 | 41.79 |
| CDX97209 | Canola | nucleus | 35.52 | 33.62 |
| CDY50901 | Canola | nucleus | 28.36 | 31.77 |
| CDY22635 | Canola | nucleus | 29.25 | 31.72 |
| CDX93504 | Canola | nucleus | 27.76 | 31.63 |
| CDY06359 | Canola | nucleus | 28.66 | 31.17 |
| CDY32589 | Canola | nucleus | 22.99 | 30.68 |
| CDX94440 | Canola | nucleus | 22.99 | 29.96 |
| CDY50197 | Canola | nucleus | 22.09 | 29.6 |
| CDX92718 | Canola | nucleus | 22.99 | 29.39 |
| CDY42172 | Canola | nucleus | 25.67 | 29.25 |
| CDY43404 | Canola | nucleus | 25.67 | 29.25 |
| CDY42171 | Canola | nucleus | 25.67 | 29.25 |
| CDY08409 | Canola | nucleus | 25.67 | 29.25 |
| CDY32188 | Canola | nucleus | 28.96 | 28.87 |
| CDY38910 | Canola | nucleus | 22.99 | 28.84 |
| CDY68301 | Canola | nucleus | 28.66 | 28.66 |
| CDY31082 | Canola | nucleus | 29.55 | 28.61 |
| CDX89413 | Canola | nucleus | 22.99 | 28.52 |
| CDX87038 | Canola | nucleus | 28.66 | 28.4 |
| CDY05881 | Canola | nucleus | 21.49 | 27.91 |
| CDY64708 | Canola | nucleus | 21.49 | 27.91 |
| CDX88230 | Canola | nucleus | 28.36 | 26.69 |
| CDX80576 | Canola | nucleus | 28.36 | 26.61 |
| CDY55231 | Canola | nucleus | 25.97 | 26.52 |
| CDY58217 | Canola | nucleus | 26.57 | 26.49 |
| CDY07124 | Canola | nucleus | 26.57 | 26.49 |
| CDY39077 | Canola | nucleus | 27.46 | 25.77 |
| CDY37496 | Canola | nucleus | 26.87 | 25.21 |
| CDX97526 | Canola | nucleus | 25.37 | 25.07 |
| CDY08343 | Canola | nucleus | 26.87 | 24.39 |
| CDY38211 | Canola | nucleus | 26.87 | 24.39 |
| CDY25547 | Canola | nucleus | 26.27 | 23.78 |
| CDY34386 | Canola | extracellular | 10.45 | 11.67 |
| CDY05517 | Canola | plastid | 2.99 | 5.85 |
| CDY70493 | Canola | cytosol, plastid | 2.09 | 5.3 |
| CDY70602 | Canola | nucleus, plastid | 2.39 | 5.13 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078HDU6 | UniProt:A0A078HDU6 | EnsemblPlants:CDY35982 | ProteinID:CDY35982 |
| ProteinID:CDY35982.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00059540001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF888 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE3B8A | SEG:seg |
Description
BnaA05g29680DBnaA05g29680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDU6]
Coordinates
chrLK032364:-:283107..284344
Molecular Weight (calculated)
37550.9 Da
IEP (calculated)
5.635
GRAVY (calculated)
-0.702
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMRNQDITT IRDKNKANNA CGGNNNKPKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIFHLH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNNTS SGSSPNNSNS NSLEPIDQQV DMGGNSNPMM NSYHHQDDMM IVGNTMHMDS SSFYAPVVSG
201: VGLNQLDPLI SVPDHSRYQQ MGNTGNNNVN GLGDYGSAVL DPISNRASVE NEWFLPPSEN TNGIACATSN NLNLEALDLC FSSKNMCHSE SFKVGNIMGM
301: ENSSWEIENP KIGDWDLDSL IDNNSSFPFL DFQVE
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNNTS SGSSPNNSNS NSLEPIDQQV DMGGNSNPMM NSYHHQDDMM IVGNTMHMDS SSFYAPVVSG
201: VGLNQLDPLI SVPDHSRYQQ MGNTGNNNVN GLGDYGSAVL DPISNRASVE NEWFLPPSEN TNGIACATSN NLNLEALDLC FSSKNMCHSE SFKVGNIMGM
301: ENSSWEIENP KIGDWDLDSL IDNNSSFPFL DFQVE
001: MMMRKPDITT IRDKGKPNHA CGGNNNKPKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIFHLH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD
Arabidopsis Description
MYB83Transcription factor MYB83 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6U1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.