Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38211 | Canola | nucleus | 86.22 | 86.45 |
| CDY08343 | Canola | nucleus | 85.95 | 86.18 |
| CDY34386 | Canola | extracellular | 67.84 | 83.67 |
| AT1G63910.1 | Thale cress | nucleus | 82.16 | 82.16 |
| CDY05331 | Canola | nucleus | 23.51 | 65.91 |
| CDY05516 | Canola | nucleus | 23.24 | 65.15 |
| VIT_02s0025g00320.t01 | Wine grape | nucleus | 48.65 | 59.21 |
| KRH77586 | Soybean | nucleus | 50.81 | 57.67 |
| KRH27893 | Soybean | nucleus | 50.54 | 57.54 |
| KRH41236 | Soybean | nucleus | 49.19 | 56.7 |
| KRH59965 | Soybean | nucleus | 47.03 | 54.38 |
| GSMUA_Achr10P... | Banana | nucleus | 40.81 | 50.84 |
| Solyc08g081500.1.1 | Tomato | nucleus | 43.51 | 48.64 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 39.73 | 47.27 |
| CDX93504 | Canola | nucleus | 26.22 | 32.99 |
| CDY50901 | Canola | nucleus | 26.49 | 32.78 |
| CDY42171 | Canola | nucleus | 25.41 | 31.97 |
| CDY42172 | Canola | nucleus | 25.41 | 31.97 |
| CDY08409 | Canola | nucleus | 25.41 | 31.97 |
| CDY06359 | Canola | nucleus | 26.49 | 31.82 |
| CDY22635 | Canola | nucleus | 26.49 | 31.72 |
| CDY43404 | Canola | nucleus | 25.14 | 31.63 |
| CDX91158 | Canola | nucleus | 23.24 | 30.94 |
| CDX85684 | Canola | nucleus | 23.24 | 30.82 |
| CDY53970 | Canola | nucleus | 23.24 | 30.71 |
| CDX78493 | Canola | nucleus | 23.24 | 30.71 |
| CDY55231 | Canola | nucleus | 27.03 | 30.49 |
| CDY39077 | Canola | nucleus | 29.19 | 30.25 |
| CDY37496 | Canola | nucleus | 28.65 | 29.69 |
| CDY32589 | Canola | nucleus | 20.0 | 29.48 |
| CDY31082 | Canola | nucleus | 27.57 | 29.48 |
| CDY58217 | Canola | nucleus | 26.76 | 29.46 |
| CDY32188 | Canola | nucleus | 26.76 | 29.46 |
| CDY50197 | Canola | nucleus | 19.73 | 29.2 |
| CDX94440 | Canola | nucleus | 20.27 | 29.18 |
| CDY07124 | Canola | nucleus | 26.49 | 29.17 |
| CDX97526 | Canola | nucleus | 26.49 | 28.91 |
| CDX87038 | Canola | nucleus | 26.22 | 28.7 |
| CDY68301 | Canola | nucleus | 25.68 | 28.36 |
| CDY64708 | Canola | nucleus | 19.73 | 28.29 |
| CDX92718 | Canola | nucleus | 20.0 | 28.24 |
| CDX89413 | Canola | nucleus | 20.54 | 28.15 |
| CDY38910 | Canola | nucleus | 20.27 | 28.09 |
| CDY05881 | Canola | nucleus | 18.92 | 27.13 |
| CDX88230 | Canola | nucleus | 25.95 | 26.97 |
| CDX80576 | Canola | nucleus | 25.95 | 26.89 |
| CDY27999 | Canola | nucleus | 24.05 | 26.57 |
| CDX74013 | Canola | nucleus | 24.32 | 26.47 |
| CDY35982 | Canola | nucleus | 23.78 | 26.27 |
| CDY70536 | Canola | nucleus | 23.78 | 25.66 |
| CDX97209 | Canola | nucleus | 22.97 | 24.01 |
| CDY70602 | Canola | nucleus, plastid | 2.16 | 5.13 |
| CDY05517 | Canola | plastid | 2.16 | 4.68 |
| CDY70493 | Canola | cytosol, plastid | 1.35 | 3.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078GKA2 | UniProt:A0A078GKA2 | EnsemblPlants:CDY25547 | ProteinID:CDY25547 |
| ProteinID:CDY25547.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00032800001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF451 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF3D72 | SEG:seg |
Description
BnaC09g11720DBnaC09g11720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKA2]
Coordinates
chrLK032176:-:432467..434599
Molecular Weight (calculated)
42341.1 Da
IEP (calculated)
6.316
GRAVY (calculated)
-0.701
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHHSCCTQQ KVKRGLWSPE EDEKLIRYIT TYGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF SPEEEKLIIS LHGVVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKIRKPH HHYNRHQPSI TTVTLNVDAT STATGVPSST TTSTIDNLHF DGFMDSPNQL NFTYAQETTT KIQETLFSHK PPLFMVDTTL
201: PVLEGMFSQN IITNNNNNNN DHDTQTGGRG SVFEQAFLTH NTEQWDMNPP QQERIQVPTM VSDLFNNSTN SNTETFTSYK LPALAEGNVD NISQVDQNSN
301: AQYGDIASTF ECFRKQELNY DQWINSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMTLESS ALSSYFFILN
101: DNEIKNYWNS WIKKKIRKPH HHYNRHQPSI TTVTLNVDAT STATGVPSST TTSTIDNLHF DGFMDSPNQL NFTYAQETTT KIQETLFSHK PPLFMVDTTL
201: PVLEGMFSQN IITNNNNNNN DHDTQTGGRG SVFEQAFLTH NTEQWDMNPP QQERIQVPTM VSDLFNNSTN SNTETFTSYK LPALAEGNVD NISQVDQNSN
301: AQYGDIASTF ECFRKQELNY DQWINSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMTLESS ALSSYFFILN
001: MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF SPEEEKLIIS LHGVVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
Arabidopsis Description
AtMYB103MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.