Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029129.1-P | Field mustard | nucleus | 97.21 | 91.39 |
| CDY38910 | Canola | nucleus | 96.81 | 91.01 |
| AT5G52260.1 | Thale cress | nucleus | 80.48 | 75.37 |
| Solyc01g009650.1.1 | Tomato | nucleus | 24.3 | 67.03 |
| CDY50197 | Canola | nucleus | 57.37 | 57.6 |
| CDY05516 | Canola | nucleus | 30.28 | 57.58 |
| CDX92718 | Canola | nucleus | 59.36 | 56.87 |
| CDY05331 | Canola | nucleus | 29.88 | 56.82 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 31.47 | 55.63 |
| CDX94440 | Canola | nucleus | 56.57 | 55.25 |
| CDX89413 | Canola | nucleus | 57.77 | 53.7 |
| KRH35334 | Soybean | nucleus | 40.24 | 37.41 |
| CDY05881 | Canola | nucleus | 38.25 | 37.21 |
| CDY64708 | Canola | nucleus | 37.85 | 36.82 |
| PGSC0003DMT400037080 | Potato | nucleus | 40.24 | 36.33 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 39.04 | 35.77 |
| KRH09018 | Soybean | nucleus | 41.43 | 35.74 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 39.04 | 35.51 |
| Solyc03g025870.2.1 | Tomato | nucleus | 39.44 | 35.48 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 38.65 | 35.4 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 39.04 | 35.38 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 39.04 | 35.38 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 39.04 | 35.13 |
| KRH38485 | Soybean | nucleus | 40.64 | 35.05 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 39.04 | 34.88 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 39.04 | 34.63 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 38.65 | 34.28 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 33.47 | 34.15 |
| Os04t0532800-01 | Rice | nucleus | 37.05 | 34.07 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 38.25 | 33.92 |
| Zm00001d051267_P001 | Maize | nucleus | 37.05 | 33.45 |
| Zm00001d017383_P001 | Maize | nucleus | 38.25 | 32.99 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 37.45 | 32.75 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 29.08 | 32.74 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 38.65 | 32.55 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 39.04 | 32.24 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 35.46 | 31.9 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 35.06 | 31.65 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 37.05 | 31.53 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 37.05 | 31.53 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 36.26 | 31.38 |
| EES07547 | Sorghum | nucleus | 37.85 | 31.15 |
| KRG91494 | Soybean | nucleus | 41.04 | 30.93 |
| EES11177 | Sorghum | nucleus | 36.65 | 30.87 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 37.85 | 30.84 |
| EES06150 | Sorghum | nucleus | 36.65 | 30.77 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 33.07 | 30.4 |
| Zm00001d014989_P001 | Maize | nucleus | 35.86 | 29.22 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 35.86 | 29.22 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 35.06 | 28.57 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 35.46 | 28.43 |
| CDY53970 | Canola | nucleus | 31.08 | 27.86 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 35.06 | 27.85 |
| CDX85684 | Canola | nucleus | 30.68 | 27.6 |
| CDY42171 | Canola | nucleus | 32.27 | 27.55 |
| CDY08409 | Canola | nucleus | 32.27 | 27.55 |
| CDY42172 | Canola | nucleus | 32.27 | 27.55 |
| CDX78493 | Canola | nucleus | 30.68 | 27.5 |
| CDX93504 | Canola | nucleus | 31.87 | 27.21 |
| CDX91158 | Canola | nucleus | 29.88 | 26.98 |
| CDY50901 | Canola | nucleus | 31.87 | 26.76 |
| CDY43404 | Canola | nucleus | 31.08 | 26.53 |
| CDY32188 | Canola | nucleus | 34.66 | 25.89 |
| CDY22635 | Canola | nucleus | 31.87 | 25.89 |
| CDY31082 | Canola | nucleus | 35.06 | 25.43 |
| CDY06359 | Canola | nucleus | 31.08 | 25.32 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 35.06 | 24.79 |
| CDY68301 | Canola | nucleus | 32.67 | 24.48 |
| CDX87038 | Canola | nucleus | 32.67 | 24.26 |
| CDY07124 | Canola | nucleus | 32.27 | 24.11 |
| CDY58217 | Canola | nucleus | 32.27 | 24.11 |
| CDY27999 | Canola | nucleus | 31.08 | 23.28 |
| CDX88230 | Canola | nucleus | 32.67 | 23.03 |
| CDY35982 | Canola | nucleus | 30.68 | 22.99 |
| CDX80576 | Canola | nucleus | 32.67 | 22.97 |
| CDX74013 | Canola | nucleus | 30.28 | 22.35 |
| CDY70536 | Canola | nucleus | 30.28 | 22.16 |
| CDX97209 | Canola | nucleus | 30.68 | 21.75 |
| CDY55231 | Canola | nucleus | 27.89 | 21.34 |
| CDY39077 | Canola | nucleus | 29.88 | 21.01 |
| CDY37496 | Canola | nucleus | 29.48 | 20.73 |
| CDX97526 | Canola | nucleus | 27.49 | 20.35 |
| CDY08343 | Canola | nucleus | 29.48 | 20.05 |
| CDY38211 | Canola | nucleus | 29.48 | 20.05 |
| CDY25547 | Canola | nucleus | 29.48 | 20.0 |
| CDY34386 | Canola | extracellular | 11.55 | 9.67 |
| CDY70493 | Canola | cytosol, plastid | 2.39 | 4.55 |
| CDY70602 | Canola | nucleus, plastid | 1.99 | 3.21 |
| CDY05517 | Canola | plastid | 1.59 | 2.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078H588 | UniProt:A0A078H588 | EnsemblPlants:CDY32589 | ProteinID:CDY32589 |
| ProteinID:CDY32589.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00052605001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF563 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE951D | SEG:seg |
Description
BnaC03g15570DBnaC03g15570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H588]
Coordinates
chrLK032297:-:45540..46663
Molecular Weight (calculated)
29393.7 Da
IEP (calculated)
8.980
GRAVY (calculated)
-0.931
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKMTKSGER PKQRQRKGLW SPEEDQKLKS FILSQGHACW TTVPILAGLQ RNGKSCRLRW INYLRPGLKR GTFSAEEEET ILILHSSLGN KWSRIAKYLP
101: GRTDNEIKNY WHSYLKKGCL KSQPPLKTQR NPETLDHVIS FQTLPEKPYS PPSQGSNKNM MNSNNMPKLF FSEWITSSDP RVNYSSEFTD SLHINQTQNR
201: NEDEELMMIK NSYSSLEDDV MFRTEFQQPH HEYANYYTSE DFFINSDVTY M
101: GRTDNEIKNY WHSYLKKGCL KSQPPLKTQR NPETLDHVIS FQTLPEKPYS PPSQGSNKNM MNSNNMPKLF FSEWITSSDP RVNYSSEFTD SLHINQTQNR
201: NEDEELMMIK NSYSSLEDDV MFRTEFQQPH HEYANYYTSE DFFINSDVTY M
001: MTKSGERPKQ RQRKGLWSPE EDQKLKSFIL SRGHACWTTV PILAGLQRNG KSCRLRWINY LRPGLKRGSF SEEEEETILT LHSSLGNKWS RIAKYLPGRT
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
Arabidopsis Description
AtMYB19MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.