Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | KRH14801 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | KRH73341 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH38485 | Soybean | nucleus | 92.44 | 92.44 |
| KRH35334 | Soybean | nucleus | 64.26 | 69.26 |
| Solyc01g009650.1.1 | Tomato | nucleus | 20.96 | 67.03 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 30.93 | 63.38 |
| KRG91494 | Soybean | nucleus | 65.29 | 57.06 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 50.52 | 49.33 |
| PGSC0003DMT400037080 | Potato | nucleus | 45.36 | 47.48 |
| Solyc03g025870.2.1 | Tomato | nucleus | 43.99 | 45.88 |
| Bra013900.1-P | Field mustard | nucleus | 33.33 | 45.12 |
| CDX94440 | Canola | nucleus | 37.46 | 42.41 |
| CDY50197 | Canola | nucleus | 36.08 | 42.0 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 40.89 | 41.46 |
| CDY32589 | Canola | nucleus | 35.74 | 41.43 |
| AT3G48920.1 | Thale cress | nucleus | 37.11 | 41.38 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 39.86 | 41.28 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 39.52 | 41.22 |
| CDX92718 | Canola | nucleus | 36.77 | 40.84 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 39.52 | 40.64 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 40.89 | 40.34 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 39.18 | 40.28 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 38.14 | 40.22 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 37.8 | 40.15 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 38.49 | 40.14 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 38.14 | 40.07 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 40.55 | 40.0 |
| CDX89413 | Canola | nucleus | 37.11 | 40.0 |
| AT4G25560.1 | Thale cress | nucleus | 38.83 | 39.93 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 38.83 | 39.93 |
| Bra029129.1-P | Field mustard | nucleus | 36.43 | 39.7 |
| CDY38910 | Canola | nucleus | 36.43 | 39.7 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 37.8 | 39.57 |
| Os04t0532800-01 | Rice | nucleus | 37.11 | 39.56 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 37.46 | 39.35 |
| AT5G52260.1 | Thale cress | nucleus | 36.08 | 39.18 |
| Bra018027.1-P | Field mustard | nucleus | 34.71 | 39.15 |
| CDY64708 | Canola | nucleus | 34.71 | 39.15 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 41.24 | 38.96 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 36.43 | 38.69 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 32.65 | 38.62 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 36.08 | 38.46 |
| CDY05881 | Canola | nucleus | 34.02 | 38.37 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 29.21 | 38.12 |
| Zm00001d017383_P001 | Maize | nucleus | 37.8 | 37.8 |
| Zm00001d051267_P001 | Maize | nucleus | 36.08 | 37.77 |
| EES11177 | Sorghum | nucleus | 38.14 | 37.25 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 36.77 | 36.9 |
| EES07547 | Sorghum | nucleus | 37.8 | 36.07 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 37.46 | 35.86 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 37.8 | 35.71 |
| EES06150 | Sorghum | nucleus | 35.4 | 34.45 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 35.4 | 33.44 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 36.08 | 33.23 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 35.4 | 32.91 |
| Zm00001d014989_P001 | Maize | nucleus | 34.71 | 32.79 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 35.74 | 29.3 |
| KRH43663 | Soybean | nucleus | 30.58 | 27.22 |
| KRH13791 | Soybean | nucleus | 30.24 | 27.08 |
| KRH20828 | Soybean | nucleus | 28.87 | 27.01 |
| KRH47101 | Soybean | nucleus | 32.3 | 26.7 |
| KRH27485 | Soybean | nucleus | 28.87 | 26.67 |
| KRG93751 | Soybean | nucleus | 30.58 | 26.49 |
| KRH23131 | Soybean | nucleus | 29.9 | 26.28 |
| KRH63612 | Soybean | nucleus | 32.3 | 26.18 |
| KRH41236 | Soybean | nucleus | 28.87 | 26.17 |
| KRH27893 | Soybean | nucleus | 29.21 | 26.15 |
| KRH44125 | Soybean | nucleus | 31.27 | 26.07 |
| KRH77586 | Soybean | nucleus | 29.21 | 26.07 |
| KRH10204 | Soybean | nucleus | 29.9 | 26.05 |
| KRH54334 | Soybean | nucleus | 32.3 | 25.82 |
| KRH18309 | Soybean | nucleus | 30.24 | 25.81 |
| KRH59965 | Soybean | nucleus | 28.18 | 25.62 |
| KRH24713 | Soybean | nucleus | 29.55 | 25.6 |
| KRH29717 | Soybean | nucleus | 29.9 | 25.59 |
| KRH10036 | Soybean | nucleus | 30.93 | 25.5 |
| KRH57123 | Soybean | nucleus | 31.27 | 24.59 |
| KRH03235 | Soybean | nucleus | 29.55 | 23.76 |
| KRH68350 | Soybean | nucleus | 33.68 | 23.45 |
| KRH33726 | Soybean | nucleus | 34.02 | 23.08 |
| Bra019154.1-P | Field mustard | nucleus | 36.43 | 22.99 |
| KRH68389 | Soybean | nucleus | 32.99 | 22.97 |
| KRG90431 | Soybean | nucleus | 33.68 | 22.9 |
| KRG96660 | Soybean | nucleus | 33.68 | 22.58 |
| KRH69136 | Soybean | nucleus | 32.99 | 22.12 |
| KRH33667 | Soybean | nucleus | 33.68 | 21.49 |
| KRG96619 | Soybean | plastid, vacuole | 33.68 | 19.8 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100803537 | MapMan:15.5.2.1 | EMBL:ACUP02010263 | EnsemblPlantsGene:GLYMA_16G189400 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | UniProt:I1MPU3 | InterPro:IPR017930 | EnsemblPlants:KRH09018 | ProteinID:KRH09018 |
| ProteinID:KRH09018.1 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF563 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000233AD82 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr16:+:35199461..35202266
Molecular Weight (calculated)
33209.8 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.784
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQPLEKAK PKYRKGLWSP EEDNKLRNHI IKHGHGCWSS VPIKAGLQRN GKSCRLRWIN YLRPGLKRGV FSKHEEDTIM VLHHMLGNKW SQIAQHLPGR
101: TDNEIKNYWH SYLKKKEIKA KEMESDKEIQ HASSSSDTME NSLSPQKLAT QDPSYSLLEN LDKSIAHNDN FFSQSYNFSK EACQSSLPLP KLLFSEWLSV
201: DQVDGGSSVN SDDSLVLGNE FDQNSTFQEA IMHMLEENFG EEYHNSLIHS STTEVYNSQL KSTNQVDGSD FINCIPGNEL CSNFSLTNHA M
101: TDNEIKNYWH SYLKKKEIKA KEMESDKEIQ HASSSSDTME NSLSPQKLAT QDPSYSLLEN LDKSIAHNDN FFSQSYNFSK EACQSSLPLP KLLFSEWLSV
201: DQVDGGSSVN SDDSLVLGNE FDQNSTFQEA IMHMLEENFG EEYHNSLIHS STTEVYNSQL KSTNQVDGSD FINCIPGNEL CSNFSLTNHA M
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.