Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G219300.1 | Wheat | nucleus | 96.17 | 93.56 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 95.82 | 93.22 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 84.67 | 78.9 |
| Zm00001d017383_P001 | Maize | nucleus | 71.78 | 70.79 |
| EES07547 | Sorghum | nucleus | 74.22 | 69.84 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 54.01 | 69.51 |
| Zm00001d051267_P001 | Maize | nucleus | 66.9 | 69.06 |
| Solyc01g009650.1.1 | Tomato | nucleus | 21.25 | 67.03 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 63.07 | 65.34 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 62.37 | 64.62 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 60.63 | 61.48 |
| Bra013900.1-P | Field mustard | nucleus | 31.71 | 42.33 |
| KRH35334 | Soybean | nucleus | 39.37 | 41.85 |
| KRH09018 | Soybean | nucleus | 41.46 | 40.89 |
| KRH38485 | Soybean | nucleus | 40.77 | 40.21 |
| PGSC0003DMT400037080 | Potato | nucleus | 37.98 | 39.21 |
| CDY64708 | Canola | nucleus | 33.8 | 37.6 |
| Bra018027.1-P | Field mustard | nucleus | 33.8 | 37.6 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 46.34 | 37.46 |
| CDY32589 | Canola | nucleus | 32.75 | 37.45 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 38.68 | 37.25 |
| Solyc03g025870.2.1 | Tomato | nucleus | 35.89 | 36.92 |
| CDY50197 | Canola | nucleus | 31.71 | 36.4 |
| AT5G52260.1 | Thale cress | nucleus | 33.8 | 36.19 |
| CDY05881 | Canola | nucleus | 32.4 | 36.05 |
| Bra029129.1-P | Field mustard | nucleus | 33.45 | 35.96 |
| CDY38910 | Canola | nucleus | 33.45 | 35.96 |
| AT3G48920.1 | Thale cress | nucleus | 32.4 | 35.63 |
| CDX89413 | Canola | nucleus | 33.45 | 35.56 |
| CDX94440 | Canola | nucleus | 31.71 | 35.41 |
| AT4G25560.1 | Thale cress | nucleus | 34.49 | 34.98 |
| CDX92718 | Canola | nucleus | 31.71 | 34.73 |
| KRG91494 | Soybean | nucleus | 40.07 | 34.53 |
| TraesCS1A01G365900.1 | Wheat | nucleus | 30.66 | 29.63 |
| TraesCS1A01G366100.1 | Wheat | nucleus | 29.62 | 29.11 |
| TraesCS1A01G366200.1 | Wheat | nucleus | 29.97 | 29.05 |
| TraesCS3A01G251200.1 | Wheat | nucleus | 29.62 | 29.01 |
| TraesCS2A01G152900.1 | Wheat | nucleus | 23.69 | 28.45 |
| TraesCS3A01G254500.1 | Wheat | nucleus | 30.31 | 27.53 |
| TraesCS4A01G411900.1 | Wheat | nucleus | 24.04 | 27.27 |
| TraesCS3A01G200300.1 | Wheat | nucleus | 28.57 | 27.15 |
| TraesCS1A01G366300.1 | Wheat | nucleus | 27.18 | 26.99 |
| TraesCS3A01G094300.1 | Wheat | nucleus | 26.13 | 26.98 |
| TraesCS1A01G366000.1 | Wheat | nucleus | 25.78 | 26.43 |
| TraesCS7A01G333200.1 | Wheat | nucleus | 22.3 | 25.7 |
| TraesCS7A01G304500.1 | Wheat | nucleus | 30.31 | 25.36 |
| TraesCS2A01G152700.1 | Wheat | nucleus | 30.66 | 24.24 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 29.62 | 22.43 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 32.4 | 21.63 |
| Bra019154.1-P | Field mustard | nucleus | 33.45 | 20.82 |
| TraesCS5A01G101000.1 | Wheat | nucleus | 27.87 | 20.57 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G236700.1 | EnsemblPlantsGene:TraesCS6A01G236700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:446091911..446094185
Molecular Weight (calculated)
30783.8 Da
IEP (calculated)
6.037
GRAVY (calculated)
-0.628
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKACDKPR PSYRKGLWSP EEDQKLRDYI LRHGHGCWSA LPAKAGLQRN GKSCRLRWIN YLRPGLKHGM FSPEEEETVM SLHAALGNKW SRIARHLPGR
101: TDNEVKNYWN SYLKKRVEGG KETPPAASSA ADSDGSQSPS PGEFSAAQER PSNSGSSEPP HESSSADSSC LTVTEPTACR AHAPVAPKVM FADWLNMDYI
201: GGQVAAAAPG PEAAGVVGAG GGDHRQITSQ GSAQVDGPPG VEDPLHGGFG DSGTCWEFLE QFDSMDQMQA GGGFCDLLSM TEFFGLN
101: TDNEVKNYWN SYLKKRVEGG KETPPAASSA ADSDGSQSPS PGEFSAAQER PSNSGSSEPP HESSSADSSC LTVTEPTACR AHAPVAPKVM FADWLNMDYI
201: GGQVAAAAPG PEAAGVVGAG GGDHRQITSQ GSAQVDGPPG VEDPLHGGFG DSGTCWEFLE QFDSMDQMQA GGGFCDLLSM TEFFGLN
001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
Arabidopsis Description
AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.