Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G234000.1 | Wheat | nucleus | 96.31 | 95.55 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 93.93 | 93.19 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 87.6 | 86.91 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 86.54 | 85.86 |
| EER97244 | Sorghum | nucleus | 69.13 | 68.23 |
| Os07t0497500-00 | Rice | nucleus | 68.87 | 65.25 |
| Zm00001d021537_P001 | Maize | nucleus | 51.72 | 64.69 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 47.76 | 55.35 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 43.01 | 51.75 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 43.27 | 51.41 |
| VIT_19s0085g00940.t01 | Wine grape | nucleus | 40.63 | 45.7 |
| PGSC0003DMT400018897 | Potato | nucleus | 38.52 | 45.62 |
| Bra034738.1-P | Field mustard | nucleus | 35.36 | 45.58 |
| CDY42172 | Canola | nucleus | 35.36 | 45.58 |
| CDY08409 | Canola | nucleus | 35.36 | 45.58 |
| CDY42171 | Canola | nucleus | 35.36 | 45.58 |
| Solyc02g082040.2.1 | Tomato | nucleus | 38.79 | 45.37 |
| CDY43404 | Canola | nucleus | 35.09 | 45.24 |
| Bra039339.1-P | Field mustard | nucleus | 35.09 | 45.24 |
| AT3G12720.1 | Thale cress | nucleus | 35.88 | 44.3 |
| Solyc10g005240.2.1 | Tomato | nucleus | 40.11 | 44.06 |
| VIT_01s0010g00410.t01 | Wine grape | nucleus | 39.05 | 42.9 |
| KRH43663 | Soybean | nucleus | 36.68 | 42.51 |
| KRH13791 | Soybean | nucleus | 35.62 | 41.54 |
| TraesCS3A01G251200.1 | Wheat | nucleus | 28.76 | 37.2 |
| TraesCS1A01G366100.1 | Wheat | nucleus | 26.91 | 34.93 |
| TraesCS1A01G365900.1 | Wheat | nucleus | 26.65 | 34.01 |
| TraesCS2A01G152900.1 | Wheat | nucleus | 21.11 | 33.47 |
| TraesCS1A01G366200.1 | Wheat | nucleus | 26.12 | 33.45 |
| TraesCS3A01G200300.1 | Wheat | nucleus | 26.65 | 33.44 |
| TraesCS1A01G366300.1 | Wheat | nucleus | 25.33 | 33.22 |
| TraesCS1A01G366000.1 | Wheat | nucleus | 24.54 | 33.21 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 24.01 | 32.85 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 24.27 | 32.51 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 23.22 | 31.77 |
| TraesCS4A01G411900.1 | Wheat | nucleus | 20.58 | 30.83 |
| TraesCS3A01G254500.1 | Wheat | nucleus | 25.59 | 30.7 |
| TraesCS7A01G333200.1 | Wheat | nucleus | 19.53 | 29.72 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 22.43 | 29.62 |
| TraesCS7A01G304500.1 | Wheat | nucleus | 26.65 | 29.45 |
| TraesCS2A01G152700.1 | Wheat | nucleus | 27.7 | 28.93 |
| TraesCS3A01G094300.1 | Wheat | nucleus | 19.0 | 25.9 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 23.75 | 25.35 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 28.23 | 24.88 |
| TraesCS5A01G101000.1 | Wheat | nucleus | 23.48 | 22.88 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G230400.1 | EnsemblPlantsGene:TraesCS2A01G230400 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF702 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:265273869..265275189
Molecular Weight (calculated)
40771.3 Da
IEP (calculated)
7.436
GRAVY (calculated)
-0.428
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHHCCSKQK VKRGLWSPEE DEKLLRYITA HGHSCWSAVP KNAGLQRCGK SCRLRWINYL RPDLKRGTFS EQEERTILDV HRILGNRWAQ IAKHLPGRTD
101: NEVKNFWNSC IKKKLIAQGL DPKTHNLLPA SKNLLHAHGA TGSSSNPSNN PAAGAQFHSP NGNRNGCATP LFTISSPTKA IYDAATVAPG LYDVHNPGML
201: MGQHERGHQA ALAMQQGYPY VHNNGGGLLL SFRDQTAAGV HASMDFMNGS SNSSSSMEYA AGMPNGNVFN PGVAAFMDET AAMWATVVEP GMGPGIEMAH
301: EHRQQHGLGL EEVVRLGPPP PPLINGGSSG GKGLDMMDVS SEVYGSAGTT AAFDLELMES CGLFCGAAGN GMEQLQWDC
101: NEVKNFWNSC IKKKLIAQGL DPKTHNLLPA SKNLLHAHGA TGSSSNPSNN PAAGAQFHSP NGNRNGCATP LFTISSPTKA IYDAATVAPG LYDVHNPGML
201: MGQHERGHQA ALAMQQGYPY VHNNGGGLLL SFRDQTAAGV HASMDFMNGS SNSSSSMEYA AGMPNGNVFN PGVAAFMDET AAMWATVVEP GMGPGIEMAH
301: EHRQQHGLGL EEVVRLGPPP PPLINGGSSG GKGLDMMDVS SEVYGSAGTT AAFDLELMES CGLFCGAAGN GMEQLQWDC
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Arabidopsis Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.