Factsheet for VIT_19s0085g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_09s0002g05240.t01
VIT_14s0108g00080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12720.1	VIT_09s0002g05240.t01	AT1G15570.1	21798944
AT3G12720.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT3G12720.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT3G12720.1	VIT_14s0108g00080.t01	AT3G28715.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43663	Soybean	nucleus	51.04	52.6
Bra034738.1-P	Field mustard	nucleus	45.7	52.38
CDY08409	Canola	nucleus	45.7	52.38
CDY42171	Canola	nucleus	45.7	52.38
CDY42172	Canola	nucleus	45.7	52.38
Bra039339.1-P	Field mustard	nucleus	45.1	51.7
CDY43404	Canola	nucleus	45.1	51.7
VIT_01s0010g00410.t01	Wine grape	nucleus	52.82	51.59
KRH13791	Soybean	nucleus	49.55	51.38
AT3G12720.1	Thale cress	nucleus	45.7	50.16
GSMUA_Achr9P11190_001	Banana	nucleus	43.62	44.95
GSMUA_Achr9P25110_001	Banana	nucleus	40.06	42.86
GSMUA_Achr8P03510_001	Banana	nucleus	40.36	42.63
TraesCS2B01G252000.1	Wheat	nucleus	46.59	41.1
TraesCS2D01G234000.1	Wheat	nucleus	46.59	41.1
TraesCS2A01G230400.1	Wheat	nucleus	45.7	40.63
VIT_09s0002g01670.t01	Wine grape	nucleus	36.5	39.81
HORVU2Hr1G051030.3	Barley	nucleus	45.1	39.79
EER97244	Sorghum	nucleus	45.1	39.58
HORVU2Hr1G051010.1	Barley	nucleus, plasma membrane	44.21	39.01
Os07t0497500-00	Rice	nucleus	45.4	38.25
VIT_05s0020g01100.t01	Wine grape	nucleus	33.53	38.05
Zm00001d021537_P001	Maize	nucleus	32.05	35.64
VIT_02s0025g00320.t01	Wine grape	nucleus	29.67	32.89
VIT_16s0050g00050.t01	Wine grape	nucleus	26.41	29.87
VIT_17s0000g09080.t01	Wine grape	nucleus	32.05	29.75
VIT_06s0004g02110.t01	Wine grape	nucleus	27.6	28.62
VIT_14s0060g00240.t01	Wine grape	nucleus	34.12	26.2
VIT_07s0005g02480.t01	Wine grape	nucleus	34.42	25.72
VIT_13s0064g00960.t01	Wine grape	nucleus	21.96	25.61

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100248382	wikigene:100248382	MapMan:15.5.2.1	UniProt:A5BNJ7	EMBL:AM465684
ProteinID:CAN83435	ProteinID:CAN83435.1	ProteinID:CCB48974	ProteinID:CCB48974.1	EMBL:FN595503	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100248382	wikigene:LOC100248382	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF702	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000152462E	ArrayExpress:VIT_19s0085g00940	EnsemblPlantsGene:VIT_19s0085g00940	EnsemblPlants:VIT_19s0085g00940.t01	RefSeq:XP_002265355
RefSeq:XP_002265355.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:23462631..23464270

Molecular Weight (calculated)

38057.8 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.646

Length

337 amino acids

Sequence
(BLAST)

001: MGHRCCSKQK VKRGLWSPEE DEKLIRYITA HGHGSWSSVP KLAGLQRCGK SCRLRWINYL RPELKRGSFS AQEEQSIIDV HRILGNRWAQ IAKHLPGRTD
101: NEVKNFWNSC IKKKLISQGL DPKTHNLISS HQRNTSNKVV CSLPQPHQQP FPVFTVNQQM TDDASMEVNR LPPFVTLPPL PPTQPSLQQT MAIPNSEYQN
201: PNPVWTAKDQ SSQYTISFPC GSSIGSTPII SSSSSSSVNP FGFGFLDENL IWNAHVEPLE GPRLEQVQTH QYQDQHDQQK NKINIGEMGN DHEQKCGQDI
301: DVSFDSSSFD LEFVESTLLS GAICRDLSSM DDLAWNF

Best Arabidopsis Sequence Match ( AT3G12720.1 )
(BLAST)

001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF

Arabidopsis Description

ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.