Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0108g00080.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | VIT_14s0108g00080.t01 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008206_P001 | Maize | nucleus | 14.81 | 89.04 |
| CDY05331 | Canola | nucleus | 26.42 | 87.88 |
| CDY05516 | Canola | nucleus | 26.2 | 87.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.81 | 60.36 |
| GSMUA_Achr11P... | Banana | nucleus | 30.98 | 58.37 |
| KRH68389 | Soybean | nucleus | 53.08 | 55.74 |
| CDY06359 | Canola | nucleus | 38.72 | 55.19 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 35.54 | 55.12 |
| CDY22635 | Canola | nucleus | 38.72 | 55.02 |
| KRG96660 | Soybean | nucleus | 53.53 | 54.15 |
| CDX93504 | Canola | nucleus | 36.22 | 54.08 |
| PGSC0003DMT400040774 | Potato | nucleus | 49.43 | 53.32 |
| Bra031669.1-P | Field mustard | nucleus | 39.41 | 52.91 |
| KRH33726 | Soybean | nucleus | 51.48 | 52.68 |
| CDY50901 | Canola | nucleus | 35.76 | 52.51 |
| AT1G57560.1 | Thale cress | nucleus | 37.36 | 52.23 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 43.96 | 52.16 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 53.53 | 52.11 |
| KRG90431 | Soybean | nucleus | 50.8 | 52.1 |
| Solyc10g044680.1.1 | Tomato | nucleus | 47.15 | 52.01 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 42.6 | 51.23 |
| Bra020016.1-P | Field mustard | nucleus | 38.72 | 51.2 |
| CDY32188 | Canola | nucleus | 39.18 | 51.19 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 39.86 | 51.02 |
| Bra030783.1-P | Field mustard | nucleus | 39.41 | 50.14 |
| CDY31082 | Canola | nucleus | 39.41 | 50.0 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 40.77 | 49.72 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 37.81 | 49.7 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 42.37 | 49.6 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 34.4 | 49.19 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 38.5 | 49.13 |
| PGSC0003DMT400047076 | Potato | nucleus | 47.15 | 48.59 |
| AT1G09540.1 | Thale cress | nucleus | 39.86 | 47.81 |
| VIT_05s0020g01100.t01 | Wine grape | nucleus | 32.35 | 47.81 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 41.46 | 47.77 |
| Zm00001d024784_P001 | Maize | nucleus | 27.79 | 47.66 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 38.95 | 47.5 |
| Solyc01g102340.2.1 | Tomato | nucleus | 46.01 | 47.42 |
| Zm00001d040527_P001 | Maize | nucleus | 30.3 | 47.33 |
| Os05t0140100-01 | Rice | nucleus | 46.01 | 47.31 |
| OQU77376 | Sorghum | nucleus | 45.33 | 46.28 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 44.87 | 45.92 |
| Zm00001d010907_P001 | Maize | nucleus | 44.42 | 45.77 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 44.65 | 45.69 |
| EES02806 | Sorghum | nucleus | 44.42 | 45.67 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 44.65 | 45.58 |
| GSMUA_Achr11P... | Banana | nucleus | 38.72 | 45.33 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 44.42 | 45.24 |
| Os01t0285300-01 | Rice | nucleus | 43.28 | 44.39 |
| Bra036588.1-P | Field mustard | nucleus | 32.8 | 42.99 |
| CDX87038 | Canola | nucleus | 33.03 | 42.9 |
| CDY68301 | Canola | nucleus | 32.57 | 42.69 |
| AT5G26660.1 | Thale cress | nucleus | 33.49 | 41.76 |
| VIT_17s0000g09080.t01 | Wine grape | nucleus | 34.4 | 41.6 |
| CDX88230 | Canola | nucleus | 32.8 | 40.45 |
| CDX80576 | Canola | nucleus | 32.8 | 40.34 |
| VIT_09s0002g01670.t01 | Wine grape | nucleus | 26.2 | 37.22 |
| Bra009910.1-P | Field mustard | nucleus | 26.65 | 35.45 |
| VIT_02s0025g00320.t01 | Wine grape | nucleus | 23.69 | 34.21 |
| VIT_19s0085g00940.t01 | Wine grape | nucleus | 26.2 | 34.12 |
| Bra020526.1-P | Field mustard | nucleus | 32.8 | 32.73 |
| VIT_01s0010g00410.t01 | Wine grape | nucleus | 25.51 | 32.46 |
| VIT_06s0004g02110.t01 | Wine grape | nucleus | 23.46 | 31.69 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 21.41 | 31.54 |
| VIT_13s0064g00960.t01 | Wine grape | nucleus | 20.05 | 30.45 |
| CDY05517 | Canola | plastid | 5.47 | 14.04 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100240910 | wikigene:100240910 | MapMan:15.5.2.1 | EMBL:AM486152 | ProteinID:CAN62191 |
| ProteinID:CAN62191.1 | ProteinID:CCB61971 | ProteinID:CCB61971.1 | UniProt:F6I4I7 | EMBL:FN596746 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010119 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EntrezGene:LOC100240910 | wikigene:LOC100240910 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF910 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001984A50 | ArrayExpress:VIT_14s0060g00240 | EnsemblPlantsGene:VIT_14s0060g00240 | EnsemblPlants:VIT_14s0060g00240.t01 |
| RefSeq:XP_002276091 | RefSeq:XP_002276091.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr14:-:240314..242056
Molecular Weight (calculated)
48644.9 Da
IEP (calculated)
6.890
GRAVY (calculated)
-0.620
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLMHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQQEESLIIE LHAVLGNRWS QIAAQLPGRT
101: DNEIKNLWNS CIKKKLRQKG IDPNTHKPLV EAENGQDKLP NSDKSNEKAN ELNLVEAENL KPLSTAAEQY PVEVSPSSKI NSSSNGNNLT PPQPTQEFFL
201: DRFVTSHESS TTSCRPSGLV GHFSFQQLNY GPNIGLSVNP NATLSFNPNS RSPEIISEFS SSMTPTILPS MLSTILPTPT SIKPSISLPS SNPSIGSFDV
301: NGVQNWEVGT FSNNASSSNG SRNSIELQSN SAFFENNFFS LGLADCGKSD KENQIHMLEG DPEDIKWSEY LHTPFLLGTT LQNQSPQPIY SETKPGIHFT
401: TDGSSTGWHQ NQQEQPIQAS ADIYTKDLQR LGVAFGQIC
101: DNEIKNLWNS CIKKKLRQKG IDPNTHKPLV EAENGQDKLP NSDKSNEKAN ELNLVEAENL KPLSTAAEQY PVEVSPSSKI NSSSNGNNLT PPQPTQEFFL
201: DRFVTSHESS TTSCRPSGLV GHFSFQQLNY GPNIGLSVNP NATLSFNPNS RSPEIISEFS SSMTPTILPS MLSTILPTPT SIKPSISLPS SNPSIGSFDV
301: NGVQNWEVGT FSNNASSSNG SRNSIELQSN SAFFENNFFS LGLADCGKSD KENQIHMLEG DPEDIKWSEY LHTPFLLGTT LQNQSPQPIY SETKPGIHFT
401: TDGSSTGWHQ NQQEQPIQAS ADIYTKDLQR LGVAFGQIC
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.