Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0587000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | Os01t0587000-01 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G084400.1 | Wheat | nucleus | 92.97 | 92.54 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 93.21 | 92.34 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 92.74 | 92.31 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 92.74 | 92.09 |
| OQU77376 | Sorghum | nucleus | 91.33 | 90.7 |
| Zm00001d010907_P001 | Maize | nucleus | 88.76 | 88.97 |
| CDY05331 | Canola | nucleus | 27.17 | 87.88 |
| CDY05516 | Canola | nucleus | 26.93 | 87.12 |
| Zm00001d024784_P001 | Maize | nucleus | 47.31 | 78.91 |
| Os01t0285300-01 | Rice | nucleus | 75.18 | 75.0 |
| GSMUA_Achr11P... | Banana | nucleus | 32.55 | 59.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.77 | 57.09 |
| CDX93504 | Canola | nucleus | 37.0 | 53.74 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 35.6 | 53.71 |
| CDY50901 | Canola | nucleus | 37.0 | 52.84 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 44.26 | 51.78 |
| Bra030783.1-P | Field mustard | nucleus | 41.69 | 51.59 |
| CDY32188 | Canola | nucleus | 40.52 | 51.49 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 37.0 | 51.47 |
| CDY31082 | Canola | nucleus | 41.69 | 51.45 |
| CDY06359 | Canola | nucleus | 37.0 | 51.3 |
| CDY22635 | Canola | nucleus | 36.77 | 50.81 |
| AT1G57560.1 | Thale cress | nucleus | 37.24 | 50.64 |
| Bra020016.1-P | Field mustard | nucleus | 38.88 | 50.0 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 42.15 | 50.0 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 39.81 | 49.56 |
| Bra031669.1-P | Field mustard | nucleus | 37.94 | 49.54 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 39.58 | 49.13 |
| Bra036588.1-P | Field mustard | nucleus | 37.94 | 48.36 |
| CDY68301 | Canola | nucleus | 37.94 | 48.36 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 42.39 | 48.27 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 37.7 | 48.2 |
| CDX87038 | Canola | nucleus | 37.7 | 47.63 |
| AT1G09540.1 | Thale cress | nucleus | 40.75 | 47.54 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 39.81 | 47.22 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 40.75 | 47.03 |
| AT5G26660.1 | Thale cress | nucleus | 38.17 | 46.31 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 47.31 | 46.01 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 40.52 | 45.41 |
| KRG90431 | Soybean | nucleus | 45.43 | 45.33 |
| CDX80576 | Canola | nucleus | 37.7 | 45.1 |
| GSMUA_Achr11P... | Banana | nucleus | 39.58 | 45.07 |
| CDX88230 | Canola | nucleus | 37.47 | 44.94 |
| KRH33726 | Soybean | nucleus | 43.79 | 43.59 |
| KRH68389 | Soybean | nucleus | 42.39 | 43.3 |
| KRG96660 | Soybean | nucleus | 43.79 | 43.09 |
| Os01t0702700-01 | Rice | nucleus | 30.21 | 42.86 |
| Os05t0543600-01 | Rice | nucleus | 31.15 | 42.63 |
| PGSC0003DMT400040774 | Potato | nucleus | 40.52 | 42.51 |
| PGSC0003DMT400047076 | Potato | nucleus | 41.69 | 41.78 |
| Solyc10g044680.1.1 | Tomato | nucleus | 38.88 | 41.71 |
| Solyc01g102340.2.1 | Tomato | nucleus | 41.22 | 41.31 |
| Os01t0709000-01 | Rice | nucleus | 29.51 | 41.04 |
| Bra009910.1-P | Field mustard | nucleus | 31.15 | 40.3 |
| Os04t0532800-01 | Rice | nucleus | 22.72 | 35.53 |
| Os03t0371800-00 | Rice | nucleus | 32.79 | 35.18 |
| Bra020526.1-P | Field mustard | nucleus | 35.36 | 34.32 |
| Os08t0151300-01 | Rice | nucleus | 25.29 | 30.08 |
| Os07t0497500-00 | Rice | nucleus | 25.76 | 27.5 |
| Os07t0634900-00 | Rice | plastid | 17.8 | 21.05 |
| CDY05517 | Canola | plastid | 7.26 | 18.13 |
| Os12t0515300-00 | Rice | nucleus | 12.65 | 17.25 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:4337756 | ProteinID:AAU10775.1 | EMBL:AJ495784 | EMBL:AK111821 |
| ProteinID:BAF16511.1 | ProteinID:BAS92185.1 | ProteinID:EEE62271.1 | EMBL:FJ940216 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010119 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | EMBL:HQ858815 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | EnsemblPlantsGene:Os05g0140100 |
| EnsemblPlants:Os05t0140100-01 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | UniProt:Q688D6 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000042AC27 | RefSeq:XP_015637582.1 | SEG:seg |
Description
MYB2 phosphate-responsive gene 1, MYB transcription factorR2R3 MYB transcription factor, Regulation of phosphate-starvation responses and root architecture (Os05t0140100-01);Myb transcription factor domain containing protein. (Os05t0140100-02);Myb transcription factor domain containing protein. (Os05t0140100-03)
Coordinates
chr5:+:2311396..2315429
Molecular Weight (calculated)
47154.2 Da
IEP (calculated)
6.567
GRAVY (calculated)
-0.656
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQEEEDLIIE LHAVLGNRWS QIAAQLPGRT
101: DNEIKNLWNS CIKKKLRQKG IDPNTHKPLT EADRRGAAPT VSTERTSGSS DVNPSSAGAL GNLSHLLSET AQSSMLLPVY DKNHPETASL PRPKVPPKEL
201: FLDQLTAGHE SPSSCRSSGP TLYFPFQQPL GYSNECGTGD GASMNSLWFN QNDFNCSTIS TVMPPVSPSA LSTSMGLNLP PENPRHGGTG IGNTPFYWDG
301: SNPSSSGSTG SSGSNSMGFE PQSTTSILEN SVFPWTDIGQ EKDTRVHLVE ELKWPDLLHG TFAEATTAMQ NQSQSLYDDV IKAESQFNME GICASWFQNQ
401: QPQQQLQAAS DMYDKDLQRL PLSFEHI
101: DNEIKNLWNS CIKKKLRQKG IDPNTHKPLT EADRRGAAPT VSTERTSGSS DVNPSSAGAL GNLSHLLSET AQSSMLLPVY DKNHPETASL PRPKVPPKEL
201: FLDQLTAGHE SPSSCRSSGP TLYFPFQQPL GYSNECGTGD GASMNSLWFN QNDFNCSTIS TVMPPVSPSA LSTSMGLNLP PENPRHGGTG IGNTPFYWDG
301: SNPSSSGSTG SSGSNSMGFE PQSTTSILEN SVFPWTDIGQ EKDTRVHLVE ELKWPDLLHG TFAEATTAMQ NQSQSLYDDV IKAESQFNME GICASWFQNQ
401: QPQQQLQAAS DMYDKDLQRL PLSFEHI
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.