Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008206_P001 | Maize | nucleus | 20.38 | 87.67 |
| GSMUA_Achr11P... | Banana | nucleus | 38.22 | 51.5 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 43.31 | 48.06 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 46.82 | 47.88 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.72 | 47.64 |
| AT1G09540.1 | Thale cress | nucleus | 54.14 | 46.45 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 47.13 | 43.15 |
| Zm00001d040527_P001 | Maize | nucleus | 37.58 | 41.99 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 45.86 | 41.86 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 43.95 | 41.32 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 46.82 | 40.83 |
| Zm00001d024784_P001 | Maize | nucleus | 33.12 | 40.62 |
| KRG90431 | Soybean | nucleus | 54.46 | 39.95 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 46.18 | 39.73 |
| KRH33726 | Soybean | nucleus | 53.18 | 38.93 |
| AT5G26660.1 | Thale cress | nucleus | 43.63 | 38.92 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 46.82 | 38.58 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 43.95 | 38.33 |
| KRH68389 | Soybean | nucleus | 50.96 | 38.28 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 44.9 | 38.11 |
| KRG96660 | Soybean | nucleus | 52.23 | 37.79 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 52.23 | 37.36 |
| AT4G01680.2 | Thale cress | nucleus | 41.4 | 37.36 |
| Zm00001d010907_P001 | Maize | nucleus | 50.64 | 37.32 |
| Os05t0140100-01 | Rice | nucleus | 50.64 | 37.24 |
| OQU77376 | Sorghum | nucleus | 50.64 | 36.98 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 43.95 | 36.8 |
| Os01t0285300-01 | Rice | nucleus | 50.0 | 36.68 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 50.0 | 36.6 |
| EES02806 | Sorghum | nucleus | 49.68 | 36.53 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 49.68 | 36.36 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 49.68 | 36.28 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 49.68 | 36.19 |
| PGSC0003DMT400047076 | Potato | nucleus | 49.04 | 36.15 |
| GSMUA_Achr11P... | Banana | nucleus | 42.99 | 36.0 |
| Solyc01g102340.2.1 | Tomato | nucleus | 48.09 | 35.45 |
| Solyc10g044680.1.1 | Tomato | nucleus | 43.31 | 34.17 |
| PGSC0003DMT400040774 | Potato | nucleus | 44.27 | 34.15 |
| AT5G12870.1 | Thale cress | nucleus | 29.62 | 33.21 |
| AT3G12720.1 | Thale cress | nucleus | 31.21 | 31.92 |
| AT5G52260.1 | Thale cress | nucleus | 26.11 | 30.6 |
| AT4G25560.1 | Thale cress | nucleus | 27.07 | 30.04 |
| AT3G48920.1 | Thale cress | nucleus | 24.84 | 29.89 |
| AT1G63910.1 | Thale cress | nucleus | 33.12 | 28.11 |
| AT3G08500.1 | Thale cress | nucleus | 30.57 | 27.99 |
| AT3G13890.1 | Thale cress | nucleus | 30.89 | 26.43 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:842131 | ProteinID:AAG50738.1 | ProteinID:AEE33435.1 | ArrayExpress:AT1G57560 |
| EnsemblPlantsGene:AT1G57560 | RefSeq:AT1G57560 | TAIR:AT1G57560 | RefSeq:AT1G57560-TAIR-G | EnsemblPlants:AT1G57560.1 | TAIR:AT1G57560.1 |
| EMBL:AY550304 | Symbol:AtMYB50 | EMBL:BT029225 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 |
| GO:GO:0009987 | GO:GO:0010119 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_176068.1 | PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF934 | UniProt:Q9C695 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000009DFD3 | SEG:seg | : |
Description
AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
Coordinates
chr1:+:21316747..21318192
Molecular Weight (calculated)
35461.5 Da
IEP (calculated)
7.750
GRAVY (calculated)
-0.697
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.