Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53970 | Canola | nucleus | 85.36 | 85.36 |
| Bra008875.1-P | Field mustard | nucleus | 85.36 | 85.36 |
| CDX85684 | Canola | nucleus | 85.0 | 85.3 |
| CDX91158 | Canola | nucleus | 84.29 | 84.89 |
| CDX78493 | Canola | nucleus | 83.21 | 83.21 |
| Bra006166.1-P | Field mustard | nucleus | 82.86 | 82.86 |
| Bra023380.1-P | Field mustard | nucleus | 60.71 | 81.73 |
| Zm00001d023931_P001 | Maize | nucleus | 24.29 | 70.1 |
| CDX97209 | Canola | nucleus | 81.79 | 64.69 |
| AT3G08500.1 | Thale cress | nucleus | 46.43 | 37.9 |
| TraesCS5D01G113300.1 | Wheat | nucleus | 43.57 | 31.36 |
| TraesCS5A01G101000.1 | Wheat | nucleus | 43.57 | 31.36 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 43.57 | 31.28 |
| AT1G57560.1 | Thale cress | nucleus | 33.21 | 29.62 |
| AT5G52260.1 | Thale cress | nucleus | 28.21 | 29.48 |
| EES17106 | Sorghum | nucleus | 43.21 | 28.95 |
| AT3G48920.1 | Thale cress | nucleus | 26.79 | 28.74 |
| AT4G25560.1 | Thale cress | nucleus | 28.57 | 28.27 |
| AT5G26660.1 | Thale cress | nucleus | 33.93 | 26.99 |
| AT3G12720.1 | Thale cress | nucleus | 29.29 | 26.71 |
| AT1G09540.1 | Thale cress | nucleus | 33.57 | 25.68 |
| HORVU5Hr1G027750.1 | Barley | nucleus | 42.5 | 25.65 |
| AT3G13890.1 | Thale cress | nucleus | 32.86 | 25.07 |
| AT4G01680.2 | Thale cress | nucleus | 29.64 | 23.85 |
| AT1G63910.1 | Thale cress | nucleus | 30.36 | 22.97 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:831127 | UniProt:A0A178UMY0 | ProteinID:AED91824.1 | EMBL:AF062884 |
| ArrayExpress:AT5G12870 | EnsemblPlantsGene:AT5G12870 | RefSeq:AT5G12870 | TAIR:AT5G12870 | RefSeq:AT5G12870-TAIR-G | EnsemblPlants:AT5G12870.1 |
| TAIR:AT5G12870.1 | Symbol:ATMYB46 | EMBL:AY519621 | EMBL:BT000455 | EMBL:BT002549 | ProteinID:CAB88251.1 |
| GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009719 | GO:GO:0009751 | GO:GO:0009834 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045893 | GO:GO:0050832 |
| GO:GO:1901348 | GO:GO:2000652 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_196791.1 |
| ProteinID:OAO95045.1 | PFAM:PF00249 | PO:PO:0000230 | PO:PO:0000272 | PO:PO:0000293 | PO:PO:0000372 |
| PO:PO:0003015 | PO:PO:0006202 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009029 | PO:PO:0009046 |
| PO:PO:0009053 | PO:PO:0009062 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025257 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF577 | UniProt:Q9LXV2 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI00000ABF4A | SEG:seg | : | : | : | : |
Description
MYB46Transcription factor MYB46 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV2]
Coordinates
chr5:-:4062666..4065075
Molecular Weight (calculated)
31543.0 Da
IEP (calculated)
6.037
GRAVY (calculated)
-0.645
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.