Factsheet for Bra008875.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53970	Canola	nucleus	100.0	100.0
AT5G12870.1	Thale cress	nucleus	85.36	85.36
Bra006166.1-P	Field mustard	nucleus	83.57	83.57
Bra023380.1-P	Field mustard	nucleus	59.64	80.29
Zm00001d023931_P001	Maize	nucleus	23.57	68.04
Bra029696.1-P	Field mustard	nucleus	43.21	36.34
Bra001284.1-P	Field mustard	nucleus	43.57	35.88
Bra013900.1-P	Field mustard	nucleus	26.79	34.88
TraesCS5B01G105900.1	Wheat	nucleus	44.29	31.79
TraesCS5A01G101000.1	Wheat	nucleus	43.93	31.62
TraesCS5D01G113300.1	Wheat	nucleus	43.57	31.36
Bra034738.1-P	Field mustard	nucleus	31.07	29.59
Bra029129.1-P	Field mustard	nucleus	28.21	29.59
EES17106	Sorghum	nucleus	43.21	28.95
Bra031669.1-P	Field mustard	nucleus	33.21	28.44
Bra020016.1-P	Field mustard	nucleus	33.57	28.31
Bra039339.1-P	Field mustard	nucleus	29.64	28.23
Bra036588.1-P	Field mustard	nucleus	33.57	28.06
Bra018027.1-P	Field mustard	nucleus	25.36	27.52
Bra030783.1-P	Field mustard	nucleus	33.57	27.25
HORVU5Hr1G027750.1	Barley	nucleus	43.21	26.08
Bra021515.1-P	Field mustard	nucleus	32.5	25.56
Bra036317.1-P	Field mustard	nucleus	30.36	25.3
Bra027389.1-P	Field mustard	nucleus	29.29	23.56
Bra027771.1-P	Field mustard	nucleus	30.71	23.5
Bra027668.1-P	Field mustard	nucleus	29.29	22.22
Bra009910.1-P	Field mustard	nucleus	26.07	22.12
Bra020526.1-P	Field mustard	nucleus	32.86	20.91
Bra019154.1-P	Field mustard	nucleus	26.07	15.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra008875	EnsemblPlants:Bra008875.1	EnsemblPlants:Bra008875.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CXC8
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF577	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002543B63	SEG:seg	:	:

Description

AT5G12870 (E=8e-123) ATMYB46, MYB46 | MYB46 (MYB DOMAIN PROTEIN 46); DNA binding / transcription factor

Coordinates

chrA10:+:14237473..14239600

Molecular Weight (calculated)

31760.1 Da

IEP (calculated)

5.965

GRAVY (calculated)

-0.645

Length

280 amino acids

Sequence
(BLAST)

001: MRKPEVAAVA ATHQVQKTKK GLWSPEEDSK LMQYMISNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPHE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LVNNSSSSPN ASDSSSNSSS SLEFKDIIGS FMSFQEQGFI NPSLTNIPTT NNLFTTPHMF SHSFNEDFTP
201: CVDGLYGVNT GLQGELYPPL ECEEGDWYKA EINNHLDDVN TNGAGNVPES MRMEECWDLD QLMNTEVPSF YFNFNFKQNI

Best Arabidopsis Sequence Match ( AT5G12870.1 )
(BLAST)

001: MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI

Arabidopsis Description

MYB46Transcription factor MYB46 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.