Factsheet for Bra020016.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93504	Canola	nucleus	87.65	98.98
Zm00001d008206_P001	Maize	nucleus	19.88	90.41
Bra030783.1-P	Field mustard	nucleus	83.73	80.58
Bra031669.1-P	Field mustard	nucleus	55.72	56.57
GSMUA_Achr11P...	Banana	nucleus	37.95	54.08
GSMUA_AchrUn_...	Banana	nucleus	42.47	51.27
GSMUA_Achr4P19560_001	Banana	nucleus	40.36	47.35
GSMUA_Achr2P01830_001	Banana	nucleus	39.46	42.67
GSMUA_Achr8P18730_001	Banana	nucleus	47.29	42.43
GSMUA_Achr7P17250_001	Banana	nucleus	43.37	41.98
KRH33726	Soybean	nucleus	54.22	41.96
GSMUA_Achr1P18990_001	Banana	nucleus	41.57	41.32
GSMUA_Achr3P24580_001	Banana	nucleus	42.77	41.28
KRG90431	Soybean	nucleus	53.01	41.12
Zm00001d040527_P001	Maize	nucleus	34.64	40.93
Zm00001d024784_P001	Maize	nucleus	31.33	40.62
GSMUA_Achr3P12200_001	Banana	nucleus	43.98	40.56
GSMUA_Achr5P18400_001	Banana	nucleus	45.78	40.53
GSMUA_Achr1P25120_001	Banana	nucleus	43.67	40.28
GSMUA_Achr2P18440_001	Banana	nucleus	44.28	40.27
KRH68389	Soybean	nucleus	49.7	39.47
Bra036588.1-P	Field mustard	nucleus	39.76	39.4
Bra036317.1-P	Field mustard	nucleus	39.76	39.29
KRG96660	Soybean	nucleus	51.2	39.17
Os05t0140100-01	Rice	nucleus	50.0	38.88
GSMUA_Achr2P07930_001	Banana	nucleus	44.58	38.85
Os01t0285300-01	Rice	nucleus	50.0	38.78
VIT_14s0060g00240.t01	Wine grape	nucleus	51.2	38.72
GSMUA_Achr11P...	Banana	nucleus	43.67	38.67
EES02806	Sorghum	nucleus	49.7	38.64
Zm00001d010907_P001	Maize	nucleus	49.1	38.26
OQU77376	Sorghum	nucleus	49.1	37.91
TraesCS1D01G084400.1	Wheat	nucleus	48.8	37.76
HORVU1Hr1G017970.4	Barley	nucleus	48.8	37.76
TraesCS1A01G083100.2	Wheat	nucleus	48.8	37.67
TraesCS1B01G100600.1	Wheat	nucleus	48.8	37.59
PGSC0003DMT400047076	Potato	nucleus	47.59	37.09
Solyc10g044680.1.1	Tomato	nucleus	44.28	36.93
PGSC0003DMT400040774	Potato	nucleus	45.18	36.85
Solyc01g102340.2.1	Tomato	nucleus	46.99	36.62
Bra013900.1-P	Field mustard	nucleus	23.19	35.81
Bra008875.1-P	Field mustard	nucleus	28.31	33.57
Bra006166.1-P	Field mustard	nucleus	28.31	33.57
Bra039339.1-P	Field mustard	nucleus	29.22	32.99
Bra034738.1-P	Field mustard	nucleus	28.92	32.65
Bra009910.1-P	Field mustard	nucleus	31.33	31.52
Bra029129.1-P	Field mustard	nucleus	24.7	30.71
Bra018027.1-P	Field mustard	nucleus	23.49	30.23
Bra020526.1-P	Field mustard	nucleus	38.86	29.32
Bra021515.1-P	Field mustard	nucleus	31.02	28.93
Bra029696.1-P	Field mustard	nucleus	28.61	28.53
Bra027771.1-P	Field mustard	nucleus	30.72	27.87
Bra027668.1-P	Field mustard	nucleus	30.12	27.1
Bra001284.1-P	Field mustard	nucleus	27.71	27.06
Bra027389.1-P	Field mustard	nucleus	28.31	27.01
Bra023380.1-P	Field mustard	nucleus	12.35	19.71
Bra019154.1-P	Field mustard	nucleus	24.1	17.35

Protein Annotations

EnsemblPlants:Bra020016.1	EnsemblPlants:Bra020016.1-P	EnsemblPlantsGene:Bra020016	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF910	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000253E8B8	UniProt:M4DU23	MapMan:15.5.2.1	:	:

Description

AT1G57560 (E=8e-082) AtMYB50 | AtMYB50 (myb domain protein 50); DNA binding / transcription factor

Coordinates

chrA06:+:3270078..3271218

Molecular Weight (calculated)

37187.3 Da

IEP (calculated)

8.062

GRAVY (calculated)

-0.721

Length

332 amino acids

Sequence
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS NIKKKLRQRG IDPNTHKPIS EVDKDKTTTT SNKSPPSSSS PTTNQDFFLE RQSDFSDYFG LQKLNFNSNL GLSVTPDSSP LCSMIPAQFS
201: TGNMVGSVFQ TQVCVKPSVT LAPDNTSNFF DSGGFSWSGP NSSSSSSSLV KPNHNLEEMK WSEYSMNTPF FNGSTQNSQP IYIKSEAEYL ANVSNITDPW
301: SQSQNENLNT PEDSDVFSKD LQRMAVSFGQ SL

Best Arabidopsis Sequence Match ( AT1G09540.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL

Arabidopsis Description

MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.