Factsheet for Bra036317.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58217	Canola	nucleus	100.0	100.0
CDY07124	Canola	nucleus	98.51	98.51
AT4G01680.2	Thale cress	nucleus	89.58	86.49
GSMUA_Achr11P...	Banana	nucleus	33.63	48.5
GSMUA_AchrUn_...	Banana	nucleus	35.42	43.27
GSMUA_Achr4P19560_001	Banana	nucleus	36.31	43.11
GSMUA_Achr2P01830_001	Banana	nucleus	36.61	40.07
Bra020016.1-P	Field mustard	nucleus	39.29	39.76
Bra030783.1-P	Field mustard	nucleus	39.58	38.55
Bra031669.1-P	Field mustard	nucleus	37.5	38.53
Bra013900.1-P	Field mustard	nucleus	24.11	37.67
Bra036588.1-P	Field mustard	nucleus	36.9	37.01
GSMUA_Achr3P24580_001	Banana	nucleus	37.8	36.92
GSMUA_Achr3P12200_001	Banana	nucleus	38.99	36.39
GSMUA_Achr1P18990_001	Banana	nucleus	36.01	36.23
GSMUA_Achr2P18440_001	Banana	nucleus	38.99	35.89
GSMUA_Achr7P17250_001	Banana	nucleus	36.01	35.28
GSMUA_Achr5P18400_001	Banana	nucleus	38.99	34.93
GSMUA_Achr1P25120_001	Banana	nucleus	36.9	34.44
GSMUA_Achr8P18730_001	Banana	nucleus	37.2	33.78
GSMUA_Achr2P07930_001	Banana	nucleus	37.5	33.07
PGSC0003DMT400040774	Potato	nucleus	39.88	32.92
Bra034738.1-P	Field mustard	nucleus	28.57	32.65
Bra039339.1-P	Field mustard	nucleus	28.57	32.65
KRH68350	Soybean	nucleus	40.48	32.54
Solyc10g044680.1.1	Tomato	nucleus	38.39	32.41
GSMUA_Achr11P...	Banana	nucleus	35.42	31.73
Solyc01g102340.2.1	Tomato	nucleus	40.18	31.69
KRH69136	Soybean	nucleus	40.77	31.57
PGSC0003DMT400047076	Potato	nucleus	39.88	31.46
VIT_07s0005g02480.t01	Wine grape	nucleus	41.96	31.26
Bra029129.1-P	Field mustard	nucleus	24.4	30.71
KRH33667	Soybean	nucleus	41.67	30.7
Bra008875.1-P	Field mustard	nucleus	25.3	30.36
Bra018027.1-P	Field mustard	nucleus	23.21	30.23
Bra006166.1-P	Field mustard	nucleus	25.0	30.0
Bra021515.1-P	Field mustard	nucleus	31.25	29.49
Bra009910.1-P	Field mustard	nucleus	28.27	28.79
Bra020526.1-P	Field mustard	nucleus	36.61	27.95
Bra027389.1-P	Field mustard	nucleus	28.87	27.87
KRG96619	Soybean	plastid, vacuole	40.18	27.27
Bra027771.1-P	Field mustard	nucleus	29.46	27.05
Bra029696.1-P	Field mustard	nucleus	26.49	26.73
Bra027668.1-P	Field mustard	nucleus	28.57	26.02
Bra001284.1-P	Field mustard	nucleus	25.89	25.59
Bra019154.1-P	Field mustard	nucleus	23.51	17.14
Bra023380.1-P	Field mustard	nucleus	9.52	15.38

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra036317	EnsemblPlants:Bra036317.1	EnsemblPlants:Bra036317.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:M4F5G1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF465
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002542073	SEG:seg	:

Description

AT4G01680 (E=4e-148) MYB55, AtMYB55 | MYB55 (myb domain protein 55); DNA binding / transcription factor

Coordinates

chrA09:+:540368..541572

Molecular Weight (calculated)

37720.0 Da

IEP (calculated)

7.310

GRAVY (calculated)

-0.691

Length

336 amino acids

Sequence
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEENLIIE LHAVLGNRWS QIAAQLPGRT
101: DNEIKNLWNS SLKKKLRLRG IDPVTHKLLT EIETGTDDNT TPVEKCQTTY LIETEGSSST TTGSTNHNNS NTDHLYTGNF GFQRLSLETG SRIQTGIWIP
201: QTGRNHHVDT VPSAVVLPGS MFSSGLTDST TGYRSSNLGL IELDNSFSTG PMVTEQQLQE SNYNNSTFFG TGNLNWGLTM EENQFTISNN SLQNHSNSSL
301: YSEIKSETNF FGTEAANVGM WPCNQLQPQQ HAYGHI

Best Arabidopsis Sequence Match ( AT4G01680.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEENLIIE LHAVLGNRWS QIAAQLPGRT
101: DNEIKNLWNS CLKKKLRLRG IDPVTHKLLT EIETGTDDKT KPVEKSQQTY LVETDGSSST TTCSTNQNNN TDHLYTGNFG FQRLSLENGS RIAAGSDLGI
201: WIPQTGRNHH HHVDETIPSA VVLPGSMFSS GLTGYRSSNL GLIELENSFS TGPMMTEHQQ IQESNYNNST FFGNGNLNWG LTMEENQNPF TISNHSNSSL
301: YSDIKSETNF FGTEATNVGM WPCNQLQPQQ HAYGHI

Arabidopsis Description

MYB55Myb domain protein 55 [Source:UniProtKB/TrEMBL;Acc:Q9ZSI4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.