Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P11740_001 | |
| GSMUA_Achr6P35890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | GSMUA_Achr1P11740_001 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | GSMUA_Achr6P35890_001 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008206_P001 | Maize | nucleus | 16.99 | 84.93 |
| CDY05331 | Canola | nucleus | 29.86 | 82.58 |
| CDY05516 | Canola | nucleus | 29.59 | 81.82 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 71.78 | 70.81 |
| GSMUA_Achr11P... | Banana | nucleus | 44.93 | 70.39 |
| GSMUA_Achr11P... | Banana | nucleus | 66.3 | 64.53 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.48 | 60.36 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 43.56 | 56.18 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 21.64 | 55.63 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 56.99 | 55.47 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 47.67 | 52.1 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 51.23 | 51.94 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 48.49 | 51.6 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 53.15 | 50.92 |
| Zm00001d040527_P001 | Maize | nucleus | 38.36 | 49.82 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 49.04 | 49.72 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 41.37 | 49.19 |
| CDY06359 | Canola | nucleus | 40.82 | 48.38 |
| CDY22635 | Canola | nucleus | 40.82 | 48.22 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 44.66 | 47.38 |
| CDX93504 | Canola | nucleus | 38.08 | 47.28 |
| Bra031669.1-P | Field mustard | nucleus | 41.64 | 46.48 |
| AT1G57560.1 | Thale cress | nucleus | 39.73 | 46.18 |
| CDY50901 | Canola | nucleus | 37.53 | 45.82 |
| Zm00001d024784_P001 | Maize | nucleus | 32.05 | 45.7 |
| Bra020016.1-P | Field mustard | nucleus | 40.27 | 44.28 |
| Os05t0140100-01 | Rice | nucleus | 51.78 | 44.26 |
| CDY32188 | Canola | nucleus | 39.73 | 43.15 |
| CDY31082 | Canola | nucleus | 40.55 | 42.77 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 50.14 | 42.66 |
| EES02806 | Sorghum | nucleus | 49.86 | 42.62 |
| Bra030783.1-P | Field mustard | nucleus | 40.27 | 42.61 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 51.23 | 42.6 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 50.14 | 42.56 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 50.14 | 42.46 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 49.86 | 42.42 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 52.33 | 42.35 |
| OQU77376 | Sorghum | nucleus | 49.32 | 41.86 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 35.07 | 41.69 |
| Os01t0285300-01 | Rice | nucleus | 48.49 | 41.36 |
| Zm00001d010907_P001 | Maize | nucleus | 48.22 | 41.31 |
| KRH68350 | Soybean | nucleus | 46.85 | 40.91 |
| PGSC0003DMT400040774 | Potato | nucleus | 45.48 | 40.79 |
| AT1G09540.1 | Thale cress | nucleus | 40.82 | 40.71 |
| Solyc01g102340.2.1 | Tomato | nucleus | 47.4 | 40.61 |
| PGSC0003DMT400047076 | Potato | nucleus | 47.12 | 40.38 |
| KRH68389 | Soybean | nucleus | 46.03 | 40.19 |
| KRH33726 | Soybean | nucleus | 47.12 | 40.09 |
| KRG96660 | Soybean | nucleus | 47.67 | 40.09 |
| KRG90431 | Soybean | nucleus | 46.58 | 39.72 |
| Solyc10g044680.1.1 | Tomato | nucleus | 43.29 | 39.7 |
| KRH69136 | Soybean | nucleus | 46.58 | 39.17 |
| CDY58217 | Canola | nucleus | 35.89 | 38.99 |
| CDY07124 | Canola | nucleus | 35.89 | 38.99 |
| Bra036317.1-P | Field mustard | nucleus | 35.89 | 38.99 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 33.42 | 38.73 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 32.05 | 38.24 |
| CDX87038 | Canola | nucleus | 35.34 | 38.17 |
| KRH33667 | Soybean | nucleus | 47.4 | 37.94 |
| CDY68301 | Canola | nucleus | 34.79 | 37.91 |
| Bra036588.1-P | Field mustard | nucleus | 34.79 | 37.91 |
| AT4G01680.2 | Thale cress | nucleus | 35.62 | 37.36 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 30.41 | 36.39 |
| CDX88230 | Canola | nucleus | 35.34 | 36.24 |
| CDX80576 | Canola | nucleus | 35.34 | 36.13 |
| AT5G26660.1 | Thale cress | nucleus | 34.52 | 35.8 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 29.04 | 35.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.12 | 34.98 |
| KRG96619 | Soybean | plastid, vacuole | 46.58 | 34.34 |
| GSMUA_Achr10P... | Banana | nucleus | 27.95 | 34.34 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 28.49 | 33.55 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 25.48 | 33.33 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 29.86 | 33.33 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 25.21 | 32.97 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 26.3 | 32.32 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 27.67 | 32.06 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 24.38 | 32.01 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 27.95 | 31.97 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 27.12 | 31.83 |
| Bra009910.1-P | Field mustard | nucleus | 28.49 | 31.52 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 21.1 | 31.3 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 22.19 | 29.67 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 24.38 | 28.9 |
| Bra020526.1-P | Field mustard | nucleus | 34.52 | 28.64 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 21.1 | 26.55 |
| CDY05517 | Canola | plastid | 4.11 | 8.77 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P18440_001 | EnsemblPlants:GSMUA_Achr2T18440_001 | EnsemblPlantsGene:GSMUA_Achr2G18440_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000296CAAC | UniProt:M0S935 | MapMan:15.5.2.1 | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G18440_001]
Coordinates
chr2:+:18861871..18863649
Molecular Weight (calculated)
40195.1 Da
IEP (calculated)
6.828
GRAVY (calculated)
-0.552
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGTF SQQEEDLIIE LHAVLGNRWS KIAAHLPGRT
101: DNEIKNLWNS CIKKKLRQRG IDPGTHKPLA EVDGGDDNTQ SNSGKNSGTS DLQILVTPQL AMQEPTPSVF APDYGGGRTT SSALPISSNP LLWFSQTSRH
201: LDVTNGDAIS TVAPSLSSTI LSTSMVPAPS CAADDALTNW YGGDCNSSRR SSVEDSGRIV VQSTCSSDSC IFPWPDLTPD KDVQVQLGGE TEDLKWSEYL
301: HGAFVASATP QAPIQPLYGD IKTGNQFPMN CFSTWHQNQQ LQQQLQASDI YGKDFQSVPL GFEHI
101: DNEIKNLWNS CIKKKLRQRG IDPGTHKPLA EVDGGDDNTQ SNSGKNSGTS DLQILVTPQL AMQEPTPSVF APDYGGGRTT SSALPISSNP LLWFSQTSRH
201: LDVTNGDAIS TVAPSLSSTI LSTSMVPAPS CAADDALTNW YGGDCNSSRR SSVEDSGRIV VQSTCSSDSC IFPWPDLTPD KDVQVQLGGE TEDLKWSEYL
301: HGAFVASATP QAPIQPLYGD IKTGNQFPMN CFSTWHQNQQ LQQQLQASDI YGKDFQSVPL GFEHI
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEENLIIE LHAVLGNRWS QIAAQLPGRT
101: DNEIKNLWNS CLKKKLRLRG IDPVTHKLLT EIETGTDDKT KPVEKSQQTY LVETDGSSST TTCSTNQNNN TDHLYTGNFG FQRLSLENGS RIAAGSDLGI
201: WIPQTGRNHH HHVDETIPSA VSISKFKRVT TTIQHSLEMG I
101: DNEIKNLWNS CLKKKLRLRG IDPVTHKLLT EIETGTDDKT KPVEKSQQTY LVETDGSSST TTCSTNQNNN TDHLYTGNFG FQRLSLENGS RIAAGSDLGI
201: WIPQTGRNHH HHVDETIPSA VSISKFKRVT TTIQHSLEMG I
Arabidopsis Description
MYB55Myb domain protein 55 [Source:UniProtKB/TrEMBL;Acc:Q9ZSI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.