Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES03178 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | EES03178 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010907_P001 | Maize | nucleus | 94.19 | 95.07 |
| Os05t0140100-01 | Rice | nucleus | 90.7 | 91.33 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 89.07 | 89.28 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 88.84 | 89.04 |
| CDY05331 | Canola | nucleus | 27.21 | 88.64 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 88.6 | 88.6 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 88.6 | 88.4 |
| CDY05516 | Canola | nucleus | 26.98 | 87.88 |
| Zm00001d024784_P001 | Maize | nucleus | 49.3 | 82.81 |
| EES02806 | Sorghum | nucleus | 74.42 | 74.94 |
| GSMUA_Achr11P... | Banana | nucleus | 31.63 | 58.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.74 | 57.45 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 35.12 | 53.36 |
| CDX93504 | Canola | nucleus | 36.05 | 52.72 |
| CDY50901 | Canola | nucleus | 36.28 | 52.17 |
| CDY22635 | Canola | nucleus | 37.21 | 51.78 |
| Bra030783.1-P | Field mustard | nucleus | 41.4 | 51.59 |
| CDY32188 | Canola | nucleus | 40.23 | 51.49 |
| CDY31082 | Canola | nucleus | 41.4 | 51.45 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 36.51 | 51.14 |
| CDY06359 | Canola | nucleus | 36.51 | 50.97 |
| AT1G57560.1 | Thale cress | nucleus | 36.98 | 50.64 |
| Bra031669.1-P | Field mustard | nucleus | 37.91 | 49.85 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 41.4 | 49.44 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 41.86 | 49.32 |
| Bra020016.1-P | Field mustard | nucleus | 37.91 | 49.1 |
| Bra036588.1-P | Field mustard | nucleus | 38.14 | 48.96 |
| CDY68301 | Canola | nucleus | 38.14 | 48.96 |
| CDX87038 | Canola | nucleus | 38.37 | 48.82 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 38.84 | 48.69 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 38.84 | 48.55 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 36.98 | 47.6 |
| AT1G09540.1 | Thale cress | nucleus | 40.0 | 46.99 |
| AT5G26660.1 | Thale cress | nucleus | 38.37 | 46.88 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 40.47 | 46.4 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 39.77 | 46.22 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 38.37 | 45.83 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 46.28 | 45.33 |
| CDX80576 | Canola | nucleus | 37.44 | 45.1 |
| CDX88230 | Canola | nucleus | 37.21 | 44.94 |
| KRG90431 | Soybean | nucleus | 44.42 | 44.63 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 39.3 | 44.36 |
| GSMUA_Achr11P... | Banana | nucleus | 38.37 | 44.0 |
| KRH68389 | Soybean | nucleus | 41.86 | 43.06 |
| KRH33726 | Soybean | nucleus | 42.56 | 42.66 |
| KRG96660 | Soybean | nucleus | 43.02 | 42.63 |
| PGSC0003DMT400040774 | Potato | nucleus | 39.77 | 42.01 |
| Solyc10g044680.1.1 | Tomato | nucleus | 38.37 | 41.46 |
| EES03490 | Sorghum | nucleus | 30.0 | 41.08 |
| EES18602 | Sorghum | nucleus | 30.7 | 40.99 |
| PGSC0003DMT400047076 | Potato | nucleus | 40.47 | 40.85 |
| Solyc01g102340.2.1 | Tomato | nucleus | 40.47 | 40.85 |
| Bra009910.1-P | Field mustard | nucleus | 30.93 | 40.3 |
| EER92216 | Sorghum | nucleus | 30.23 | 39.39 |
| EES03504 | Sorghum | nucleus | 28.6 | 38.56 |
| EER97608 | Sorghum | nucleus | 33.49 | 37.8 |
| EES03100 | Sorghum | nucleus | 29.53 | 37.24 |
| EES02393 | Sorghum | nucleus | 23.49 | 36.07 |
| Bra020526.1-P | Field mustard | nucleus | 35.35 | 34.55 |
| EES11177 | Sorghum | nucleus | 23.72 | 34.23 |
| EES07893 | Sorghum | nucleus | 19.3 | 32.81 |
| OQU86237 | Sorghum | nucleus | 20.47 | 32.71 |
| EES06150 | Sorghum | nucleus | 22.56 | 32.44 |
| EES13346 | Sorghum | nucleus | 25.81 | 31.44 |
| EES07547 | Sorghum | nucleus | 21.63 | 30.49 |
| EER97244 | Sorghum | nucleus | 26.51 | 29.69 |
| EES17106 | Sorghum | nucleus | 25.12 | 25.84 |
| CDY05517 | Canola | plastid | 7.21 | 18.13 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | UniProt:A0A1Z5R0R3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | ProteinID:OQU77372.1 |
| ProteinID:OQU77373.1 | ProteinID:OQU77374.1 | ProteinID:OQU77375.1 | EnsemblPlants:OQU77376 | ProteinID:OQU77376 | ProteinID:OQU77376.1 |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | InterPro:SANT/Myb | SMART:SM00717 |
| EnsemblPlantsGene:SORBI_3009G036500 | SUPFAM:SSF46689 | UniParc:UPI0003C6CD2A | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr9:-:3360405..3368080
Molecular Weight (calculated)
47574.6 Da
IEP (calculated)
6.729
GRAVY (calculated)
-0.682
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEEELIIE LHAVLGNRWS QIAAQLPGRT
101: DNEIKNLWNS CIKKKLRQKG IDPNTHKPLT EADRSGAAPT VSTERTSGSS DVNPSSAGAL GNLSHLLSET AQSSMLMPMY DKNRTETPNL ARPKVPPKEL
201: FLEQLTAGHE SPSTCRSSGQ TLYFPFQQPL GYNSESGSGD GANMNSLWFN QSDFNCSTIS TVMPPVSPSA LSTSMGLNLP PDNPRHGGTG IGSTAVDSFY
301: WDGTNPSSSS STGSRGSNSM GFEPQSTSSI LENSVFPWTN IGQEKDTRAH LVEELKWPDL LHGTFAETTT AMQNQSQTLY DDVIKAESQF SMEGICASWF
401: QNQQTQQQLQ AAPNMYDKDL QRMQLSFENI
101: DNEIKNLWNS CIKKKLRQKG IDPNTHKPLT EADRSGAAPT VSTERTSGSS DVNPSSAGAL GNLSHLLSET AQSSMLMPMY DKNRTETPNL ARPKVPPKEL
201: FLEQLTAGHE SPSTCRSSGQ TLYFPFQQPL GYNSESGSGD GANMNSLWFN QSDFNCSTIS TVMPPVSPSA LSTSMGLNLP PDNPRHGGTG IGSTAVDSFY
301: WDGTNPSSSS STGSRGSNSM GFEPQSTSSI LENSVFPWTN IGQEKDTRAH LVEELKWPDL LHGTFAETTT AMQNQSQTLY DDVIKAESQF SMEGICASWF
401: QNQQTQQQLQ AAPNMYDKDL QRMQLSFENI
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL
Arabidopsis Description
MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.