Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50901 | Canola | nucleus | 95.92 | 94.31 |
| Zm00001d008206_P001 | Maize | nucleus | 22.45 | 90.41 |
| Bra020016.1-P | Field mustard | nucleus | 98.98 | 87.65 |
| CDY05331 | Canola | nucleus | 38.44 | 85.61 |
| CDY05516 | Canola | nucleus | 38.1 | 84.85 |
| CDY32188 | Canola | nucleus | 85.03 | 74.4 |
| CDY31082 | Canola | nucleus | 87.07 | 73.99 |
| CDY22635 | Canola | nucleus | 57.48 | 54.69 |
| CDY06359 | Canola | nucleus | 57.14 | 54.55 |
| GSMUA_Achr11P... | Banana | nucleus | 40.48 | 51.07 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.22 | 47.27 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 42.52 | 44.17 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 41.5 | 39.74 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 50.0 | 39.73 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 46.26 | 39.65 |
| KRH33726 | Soybean | nucleus | 56.8 | 38.93 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 43.88 | 38.62 |
| Zm00001d040527_P001 | Maize | nucleus | 36.73 | 38.43 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 44.9 | 38.37 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 46.94 | 38.33 |
| CDY68301 | Canola | nucleus | 43.54 | 38.21 |
| CDX87038 | Canola | nucleus | 43.88 | 38.17 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 48.64 | 38.13 |
| KRG90431 | Soybean | nucleus | 55.44 | 38.08 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 47.28 | 38.08 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 46.6 | 38.06 |
| Zm00001d024784_P001 | Maize | nucleus | 32.99 | 37.89 |
| CDY58217 | Canola | nucleus | 42.86 | 37.5 |
| CDY07124 | Canola | nucleus | 42.86 | 37.5 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 48.3 | 37.27 |
| Os05t0140100-01 | Rice | nucleus | 53.74 | 37.0 |
| Os01t0285300-01 | Rice | nucleus | 53.74 | 36.92 |
| EES02806 | Sorghum | nucleus | 53.4 | 36.77 |
| Zm00001d010907_P001 | Maize | nucleus | 53.06 | 36.62 |
| KRH68389 | Soybean | nucleus | 51.7 | 36.36 |
| GSMUA_Achr11P... | Banana | nucleus | 46.26 | 36.27 |
| CDX88230 | Canola | nucleus | 43.88 | 36.24 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 54.08 | 36.22 |
| KRG96660 | Soybean | nucleus | 53.4 | 36.18 |
| CDX80576 | Canola | nucleus | 43.88 | 36.13 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 52.72 | 36.13 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 52.72 | 36.13 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 52.72 | 36.05 |
| OQU77376 | Sorghum | nucleus | 52.72 | 36.05 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 52.72 | 35.96 |
| Solyc10g044680.1.1 | Tomato | nucleus | 47.28 | 34.92 |
| PGSC0003DMT400040774 | Potato | nucleus | 48.3 | 34.89 |
| PGSC0003DMT400047076 | Potato | nucleus | 49.66 | 34.27 |
| Solyc01g102340.2.1 | Tomato | nucleus | 48.98 | 33.8 |
| CDY53970 | Canola | nucleus | 31.63 | 33.21 |
| CDY43404 | Canola | nucleus | 32.99 | 32.99 |
| CDX78493 | Canola | nucleus | 31.29 | 32.86 |
| CDX85684 | Canola | nucleus | 30.95 | 32.62 |
| CDX91158 | Canola | nucleus | 30.61 | 32.37 |
| CDY08409 | Canola | nucleus | 32.31 | 32.31 |
| CDY42172 | Canola | nucleus | 32.31 | 32.31 |
| CDY42171 | Canola | nucleus | 32.31 | 32.31 |
| CDY32589 | Canola | nucleus | 27.21 | 31.87 |
| CDY50197 | Canola | nucleus | 26.19 | 30.8 |
| CDX94440 | Canola | nucleus | 26.87 | 30.74 |
| CDY38910 | Canola | nucleus | 27.55 | 30.34 |
| CDX89413 | Canola | nucleus | 27.55 | 30.0 |
| CDY05881 | Canola | nucleus | 26.19 | 29.84 |
| CDY64708 | Canola | nucleus | 26.19 | 29.84 |
| CDX92718 | Canola | nucleus | 25.85 | 29.01 |
| CDY39077 | Canola | nucleus | 34.69 | 28.57 |
| CDY37496 | Canola | nucleus | 34.69 | 28.57 |
| CDY27999 | Canola | nucleus | 31.97 | 28.06 |
| CDY35982 | Canola | nucleus | 31.63 | 27.76 |
| CDY55231 | Canola | nucleus | 30.95 | 27.74 |
| CDX97526 | Canola | nucleus | 31.63 | 27.43 |
| CDY38211 | Canola | nucleus | 34.35 | 27.37 |
| CDY08343 | Canola | nucleus | 34.35 | 27.37 |
| CDX74013 | Canola | nucleus | 30.61 | 26.47 |
| CDY70536 | Canola | nucleus | 30.61 | 26.24 |
| CDY25547 | Canola | nucleus | 32.99 | 26.22 |
| CDX97209 | Canola | nucleus | 30.61 | 25.42 |
| CDY34386 | Canola | extracellular | 12.93 | 12.67 |
| CDY05517 | Canola | plastid | 3.74 | 6.43 |
| CDY70602 | Canola | nucleus, plastid | 2.38 | 4.49 |
| CDY70493 | Canola | cytosol, plastid | 1.02 | 2.27 |
Protein Annotations
| EnsemblPlants:CDX93504 | EnsemblPlantsGene:GSBRNA2T00156174001 | Gene3D:1.10.10.60 | GO:A0A078DYK2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF910 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX93504 | ProteinID:CDX93504.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE9D8D | MapMan:15.5.2.1 | : |
Description
BnaA06g05440D
Coordinates
chrLK031876:-:455437..457050
Molecular Weight (calculated)
32938.6 Da
IEP (calculated)
8.210
GRAVY (calculated)
-0.674
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS NIKKKLRQRG IDPNTHKPIS EVDKDKTTTT SNKSPPSSSS PTNQDFFLER PSDFSEYFGL QKLNFNSNLG LSVTPDSSPL CSMIPAQFST
201: GNMVGSVFQT QVCVKPSVTL APDNTSNFFD SGGFSCTQNS QPIYIKSEAE YLANVSNITD PWSQSQNENL NTPEDSDVFS KDLQRMAVSF GQSL
101: DNEIKNLWNS NIKKKLRQRG IDPNTHKPIS EVDKDKTTTT SNKSPPSSSS PTNQDFFLER PSDFSEYFGL QKLNFNSNLG LSVTPDSSPL CSMIPAQFST
201: GNMVGSVFQT QVCVKPSVTL APDNTSNFFD SGGFSCTQNS QPIYIKSEAE YLANVSNITD PWSQSQNENL NTPEDSDVFS KDLQRMAVSF GQSL
001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
Arabidopsis Description
AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.