Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006166.1-P | Field mustard | nucleus | 99.29 | 99.29 |
| CDX85684 | Canola | nucleus | 85.0 | 85.3 |
| CDX91158 | Canola | nucleus | 84.29 | 84.89 |
| CDY53970 | Canola | nucleus | 84.29 | 84.29 |
| AT5G12870.1 | Thale cress | nucleus | 83.21 | 83.21 |
| Zm00001d023931_P001 | Maize | nucleus | 25.0 | 72.16 |
| CDX97209 | Canola | nucleus | 81.79 | 64.69 |
| CDY05516 | Canola | nucleus | 30.36 | 64.39 |
| CDY05331 | Canola | nucleus | 30.0 | 63.64 |
| CDX74013 | Canola | nucleus | 43.21 | 35.59 |
| CDY70536 | Canola | nucleus | 42.86 | 34.99 |
| CDY35982 | Canola | nucleus | 41.79 | 34.93 |
| CDY27999 | Canola | nucleus | 41.43 | 34.63 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 44.29 | 31.79 |
| CDY50901 | Canola | nucleus | 33.93 | 31.77 |
| TraesCS5A01G101000.1 | Wheat | nucleus | 43.93 | 31.62 |
| TraesCS5D01G113300.1 | Wheat | nucleus | 43.57 | 31.36 |
| CDX93504 | Canola | nucleus | 32.86 | 31.29 |
| CDY32589 | Canola | nucleus | 27.5 | 30.68 |
| CDX94440 | Canola | nucleus | 27.5 | 29.96 |
| CDY06359 | Canola | nucleus | 32.86 | 29.87 |
| CDY22635 | Canola | nucleus | 32.86 | 29.77 |
| EES17106 | Sorghum | nucleus | 44.29 | 29.67 |
| CDY08409 | Canola | nucleus | 30.36 | 28.91 |
| CDY42171 | Canola | nucleus | 30.36 | 28.91 |
| CDY42172 | Canola | nucleus | 30.36 | 28.91 |
| CDY38910 | Canola | nucleus | 27.5 | 28.84 |
| CDY50197 | Canola | nucleus | 25.71 | 28.8 |
| CDY64708 | Canola | nucleus | 26.43 | 28.68 |
| CDX89413 | Canola | nucleus | 27.5 | 28.52 |
| CDY32188 | Canola | nucleus | 33.93 | 28.27 |
| CDY43404 | Canola | nucleus | 29.64 | 28.23 |
| CDY05881 | Canola | nucleus | 25.71 | 27.91 |
| CDX92718 | Canola | nucleus | 26.07 | 27.86 |
| CDY68301 | Canola | nucleus | 32.5 | 27.16 |
| CDY31082 | Canola | nucleus | 33.21 | 26.88 |
| CDX87038 | Canola | nucleus | 32.14 | 26.63 |
| HORVU5Hr1G027750.1 | Barley | nucleus | 42.5 | 25.65 |
| CDX88230 | Canola | nucleus | 32.14 | 25.28 |
| CDX80576 | Canola | nucleus | 32.14 | 25.21 |
| CDY58217 | Canola | nucleus | 30.0 | 25.0 |
| CDY07124 | Canola | nucleus | 30.0 | 25.0 |
| CDY55231 | Canola | nucleus | 28.93 | 24.7 |
| CDY39077 | Canola | nucleus | 31.43 | 24.65 |
| CDY37496 | Canola | nucleus | 30.71 | 24.09 |
| CDX97526 | Canola | nucleus | 28.21 | 23.3 |
| CDY25547 | Canola | nucleus | 30.71 | 23.24 |
| CDY08343 | Canola | nucleus | 30.36 | 23.04 |
| CDY38211 | Canola | nucleus | 30.36 | 23.04 |
| CDY34386 | Canola | extracellular | 11.79 | 11.0 |
| CDY70493 | Canola | cytosol, plastid | 2.86 | 6.06 |
| CDY70602 | Canola | nucleus, plastid | 3.21 | 5.77 |
| CDY05517 | Canola | plastid | 1.43 | 2.34 |
Protein Annotations
| EnsemblPlants:CDX78493 | EnsemblPlantsGene:GSBRNA2T00129891001 | Gene3D:1.10.10.60 | GO:A0A078CTL3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF577 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX78493 | ProteinID:CDX78493.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE9E0C | MapMan:15.5.2.1 | : |
Description
BnaA03g04050D
Coordinates
chrLK031815:-:996882..1000100
Molecular Weight (calculated)
31685.3 Da
IEP (calculated)
6.782
GRAVY (calculated)
-0.634
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKPEVASAA THQVKKMKKG LWSPEEDSRL MQYMISSGQG CWSDVAKNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIIRFHSIL GNRWSQIAAR
101: LPGRTDNEIK NFWNSTIKKR LKKMSDTSNL VNNSSSSPDT SDLSNNTTSS LELKDIIGSF MSLQEQGFIN PSFTNTPITN NNPFPAPHMI SHPCIDDFTP
201: YVDGLYGVNT GLQGELYFPP LECQEGDWYK ADINSHVAEM KTNGAGNVPA ESMRVEEYWD LDQLMSTEVP SFHFNFKQST
101: LPGRTDNEIK NFWNSTIKKR LKKMSDTSNL VNNSSSSPDT SDLSNNTTSS LELKDIIGSF MSLQEQGFIN PSFTNTPITN NNPFPAPHMI SHPCIDDFTP
201: YVDGLYGVNT GLQGELYFPP LECQEGDWYK ADINSHVAEM KTNGAGNVPA ESMRVEEYWD LDQLMSTEVP SFHFNFKQST
001: MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
Arabidopsis Description
MYB46Transcription factor MYB46 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.