Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G113300.1 | Wheat | nucleus | 97.94 | 97.94 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 96.92 | 96.67 |
| Zm00001d023931_P001 | Maize | nucleus | 22.88 | 91.75 |
| HORVU5Hr1G027750.1 | Barley | nucleus | 94.34 | 79.09 |
| EES17106 | Sorghum | nucleus | 66.07 | 61.48 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 39.59 | 55.2 |
| VIT_06s0004g02110.t01 | Wine grape | nucleus | 43.44 | 52.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.79 | 51.94 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 39.07 | 51.18 |
| PGSC0003DMT400018995 | Potato | nucleus | 45.76 | 50.71 |
| Solyc11g065840.1.1 | Tomato | nucleus | 45.24 | 49.86 |
| KRH24713 | Soybean | nucleus | 41.13 | 47.62 |
| KRH29717 | Soybean | nucleus | 41.39 | 47.35 |
| VIT_13s0064g00960.t01 | Wine grape | nucleus | 33.93 | 45.67 |
| KRG93751 | Soybean | nucleus | 39.07 | 45.24 |
| KRH10204 | Soybean | nucleus | 38.82 | 45.21 |
| KRH27485 | Soybean | nucleus | 36.25 | 44.76 |
| KRH23131 | Soybean | nucleus | 38.05 | 44.71 |
| KRH20828 | Soybean | nucleus | 35.73 | 44.69 |
| KRH18309 | Soybean | nucleus | 38.56 | 43.99 |
| CDY53970 | Canola | nucleus | 31.62 | 43.93 |
| CDX78493 | Canola | nucleus | 31.62 | 43.93 |
| Bra008875.1-P | Field mustard | nucleus | 31.62 | 43.93 |
| Bra006166.1-P | Field mustard | nucleus | 31.36 | 43.57 |
| AT5G12870.1 | Thale cress | nucleus | 31.36 | 43.57 |
| CDX85684 | Canola | nucleus | 31.11 | 43.37 |
| CDX91158 | Canola | nucleus | 30.85 | 43.17 |
| PGSC0003DMT400017709 | Potato | nucleus | 37.53 | 41.13 |
| Solyc01g087130.2.1 | Tomato | nucleus | 37.02 | 40.91 |
| CDX97209 | Canola | nucleus | 31.62 | 34.75 |
| TraesCS1A01G365900.1 | Wheat | nucleus | 26.48 | 34.68 |
| TraesCS1A01G366100.1 | Wheat | nucleus | 25.96 | 34.59 |
| TraesCS1A01G366000.1 | Wheat | nucleus | 24.42 | 33.93 |
| TraesCS1A01G366200.1 | Wheat | nucleus | 25.71 | 33.78 |
| TraesCS1A01G366300.1 | Wheat | nucleus | 24.94 | 33.56 |
| TraesCS2A01G152900.1 | Wheat | nucleus | 20.31 | 33.05 |
| TraesCS3A01G200300.1 | Wheat | nucleus | 25.19 | 32.45 |
| TraesCS3A01G254500.1 | Wheat | nucleus | 25.19 | 31.01 |
| Bra023380.1-P | Field mustard | nucleus | 16.45 | 30.77 |
| TraesCS3A01G251200.1 | Wheat | nucleus | 22.62 | 30.03 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 21.34 | 29.96 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 20.82 | 29.24 |
| TraesCS4A01G411900.1 | Wheat | nucleus | 18.77 | 28.85 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 20.82 | 28.62 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 20.57 | 27.87 |
| TraesCS3A01G094300.1 | Wheat | nucleus | 19.28 | 26.98 |
| TraesCS7A01G333200.1 | Wheat | nucleus | 17.22 | 26.91 |
| TraesCS2A01G152700.1 | Wheat | nucleus | 24.68 | 26.45 |
| TraesCS7A01G304500.1 | Wheat | nucleus | 22.36 | 25.36 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 27.76 | 25.12 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 22.88 | 23.48 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 21.08 | 23.1 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G101000.1 | EnsemblPlantsGene:TraesCS5A01G101000 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF577 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:146534350..146536590
Molecular Weight (calculated)
42034.2 Da
IEP (calculated)
7.103
GRAVY (calculated)
-0.544
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKPVECPAT KCSGGAAPGN SNVAAAAAKL RKGLWSPEED ERLVAYMLRS GQGSWSDVAR NAGLQRCGKS CRLRWINYLR PDLKRGAFSP QEEDLIVNLH
101: AILGNRWSQI AARLPGRTDN EIKNFWNSTI KKRLKMNSAA SSPATTECAS PREPKLDGGS ASCLDLTSLE DGSHHGMKSM WRMDSSSSSS SSSSIQQSRP
201: STMAPAANRG YGGLLLPLPD QFCGVAPSTH TSVPPFFHDH SSFKQVSPLR AGGYYPHGMA MEGGGGSCFT GEEAVGGGGE HSVLFSVPPL LEPMAVALQD
301: QTLMASTGNS DNNHRNTNST AEGTTLSSKN GCNINDDNNS KNNINSVVSY WEQHGHQQHM SRNVVMGEWD LEELMKDVSC LPFLDFQVE
101: AILGNRWSQI AARLPGRTDN EIKNFWNSTI KKRLKMNSAA SSPATTECAS PREPKLDGGS ASCLDLTSLE DGSHHGMKSM WRMDSSSSSS SSSSIQQSRP
201: STMAPAANRG YGGLLLPLPD QFCGVAPSTH TSVPPFFHDH SSFKQVSPLR AGGYYPHGMA MEGGGGSCFT GEEAVGGGGE HSVLFSVPPL LEPMAVALQD
301: QTLMASTGNS DNNHRNTNST AEGTTLSSKN GCNINDDNNS KNNINSVVSY WEQHGHQQHM SRNVVMGEWD LEELMKDVSC LPFLDFQVE
001: MMMRKPDITT IRDKGKPNHA CGGNNNKPKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIFHLH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD
Arabidopsis Description
MYB83Transcription factor MYB83 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6U1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.